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. 2023 Feb 1;14:1043967. doi: 10.3389/fmicb.2023.1043967
Tool Availability
Albacore https://github.com/nanoporetech/albacore
BasecRAWller Not Available
Bonito https://github.com/nanoporetech/bonito
Buttery-Eel https://github.com/Psy-Fer/buttery-eel
C3Poa https://github.com/rvolden/C3POa
CATCaller https://github.com/biomed-AI/CATCaller
Causalcall https://github.com/scutbioinformatic/causalcall
Chiron https://github.com/haotianteng/Chiron
DeepNano https://bitbucket.org/vboza/deepnano/src/master/
DeepNano-Blitz https://github.com/fmfi-compbio/deepnano-blitz
Deepore https://github.com/etheleon/deepore
Dorado https://github.com/nanoporetech/dorado
Flappie https://github.com/nanoporetech/flappie
Guppy Only to ONT customers
Halcyon https://github.com/relastle/halcyon
Katuali https://github.com/nanoporetech/katuali
Megalodon https://github.com/nanoporetech/megalodon
MicroPIPE https://github.com/BeatsonLab-MicrobialGenomics/micropipe
MinION Plasmid Sequence Verification Pipeline https://github.com/scottdbrown/minion-plasmid-consensus
Metrichor Only to ONT customers
Nanocall https://github.com/mateidavid/nanocall
NanoDJ https://github.com/genomicsITER/NanoDJ
Nanonet https://github.com/ProgramFiles/nanonet
Nanopype https://github.com/giesselmann/nanopype
Nanoseq https://github.com/nf-core/nanoseq/
Poreduck https://github.com/alexiswl/poreduck
PoreOver https://github.com/jordisr/poreover
Poreplex https://github.com/hyeshik/poreplex
R2C2 https://github.com/rvolden/C3POa
ReadBouncer https://github.com/JensUweUlrich/ReadBouncer
Runnie https://github.com/nanoporetech/flappie/blob/master/RUNNIE.md
SACall https://github.com/huangnengCSU/SACall-basecaller
Squiggler https://github.com/JohnUrban/squiggler
Taiyaki https://github.com/nanoporetech/taiyaki
WaveNano Not Available