Tool	Description	Availability
BaseLess	lightweight detection of sequences in raw nanopore data	https://github.com/cvdelannoy/baseLess
f5c	An optimized re-implementation of the index, call-methylation, and eventalign modules in Nanopolish	https://github.com/hasindu2008/f5c
CLT	An analytical method for nanopores based on the Central Limit Theorem (CLT)	https://github.com/xiangyan585/CLT.git
PyPore	Tools to analyze Nanopore signal data	https://sourceforge.net/projects/pb-jelly/
Sequoia	A web interface tool for visualizing similarities of nanopore sequencing data	https://github.com/jmschrei/PyPore
Sigtk	A simple toolkit performing various operations on nanopore raw signal data	https://github.com/hasindu2008/sigtk/
SquiggleKit	A toolkit for accessing and manipulating nanopore signal data	https://github.com/Psy-Fer/SquiggleKit
SquiggleNet	1D ResNet based model to classify Oxford Nanopore raw electrical signals as target or non-target for Read-Until sequence enrichment or depletion	https://github.com/welch-lab/SquiggleNet
Betaduck	For tidying the PromethION outputs and visualizing the data	https://github.com/alexiswl/betaduck
BulkVis	An app to visualize raw squiggle data from Oxford Nanopore Technologies (ONT) bulk files	https://github.com/LooseLab/bulkVis
D-GENIES	An online tool designed to compare two genomes. It supports large genome and you can interact with the dot plot to improve the visualisation	http://dgenies.toulouse.inra.fr/
Methylartist	Tools for parsing and plotting methylation patterns from nanopore data	https://github.com/adamewing/methylartist
Minidot	Creates dotplots from minimap2 results	https://github.com/thackl/minidot
Modbamtools	set of tools to manipulate and visualize data from base modification bam files	https://github.com/rrazaghi/modbamtools
NanoMethViz	A toolkit for visualizing methylation data from Oxford Nanopore sequencing	https://github.com/Shians/NanoMethViz
NanoPack	A set of tools developed for visualizing and processing long-read sequencing data from Oxford Nanopore Technologies and Pacific Biosciences	https://github.com/wdecoster/nanopack
NanoPlot	Plotting reads and alignments	https://github.com/wdecoster/NanoPlot
Plotnanopolish	Scripts for plotting nanopolish methylation data	https://github.com/gilfunk/plotnanopolish
Plotsr	A tool for visualization of synteny and structural rearrangements between multiple genomes	https://github.com/schneebergerlab/plotsr
PycoQC	pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)	https://github.com/a-slide/pycoQC
R_poRe	Extraction and visualization of nanopore sequencing data	https://sourceforge.net/projects/rpore
Streamformatics	NOT MAINTAINED:: Real-time species-typing visualization for nanopore data.	https://github.com/mbhall88/streamformatics
Swan	A python library to visualize and analyze long-read transcriptomes	https://github.com/mortazavilab/swan_vis