|
Antibodies
|
| Anti‐IDH2 monoclonal antibody in mouse |
Abcam |
Cat#: ab55271; RRID: AB_943793 |
| Purified Mouse Anti‐Human Hif1‐α monoclonal antibody in mouse |
Santa Cruz Biotechnologies |
Cat#: sc‐13515; RRID: AB_627723 |
| Carbonic anhydrase IX monoclonal antibody in mouse |
BioScience |
Cat# DF13218; RRID: AB_2846237 |
| Anti‐GLUT1 (A‐4) monoclonal antibody in mouse |
Santa Cruz Biotechnologies |
Cat# sc‐377228; RRID: AB_2190936 |
| Anti‐TIGAR polyconal antibody in rabbit |
Invitrogen |
Cat# PA1‐41487; RRID: AB_2259272 |
| PKM2 (D78A4) XP Rabbit monocloncal antibody in rabbit |
Cell Signaling Technology |
Cat# 4053; RRID: AB_1904096 |
| LDHA‐Specific polyclonal antibody in rabbit |
Proteintech |
Cat# 199871‐1‐AP |
| Anti‐ G6PD imonocloncal antibody in mouse |
Santa Cruz Biotechnologies |
Cat# sc‐373886; RRID: AB_10918100 |
| Anti‐TKT polyclonal antibody produced in rabbit |
Sigma‐Aldrich |
Cat#HPA029481; RRID: AB_10558885 |
| Anti‐CTPS1 (416‐430) polyclonal antibody produced in rabbit |
Sigma‐Aldrich |
Cat# SAB1101072; RRID: AB_10606733 |
| Anti‐PHD2 polyclonal antibody in rabbit |
Invitrogen |
Cat# PA1‐16525; RRID: AB_568563 |
| Ki‐67, mouse monoclonal anibody |
Dako |
# Cat: M7240 |
| Anti‐β‐actin monoclonal antibody in mouse |
Sigma‐Aldrich |
#Cat: A5441 |
|
Chemicals
|
| Cisplatin |
Nippon Kayaku |
N/A |
| Gemcitabine |
Nippon Kayaku |
N/A |
| 2'‐Deoxycytidine |
Sigma‐Aldrich |
#Cat: D3897 |
| AGI6780 |
Selleck Chemicals |
#Cat: S7241 |
| AGI221 (Enadesinib) |
Cayman Chemical |
#Cat: 21277 |
| [13C5]‐glutaime |
Millipore Sigma |
#Cat: 605166 |
| G6PD‐inhibitor |
Selleck Chemicals |
#Cat: S9617 |
| Leflunomide |
Selleck Chemicals |
#Cat: S1247 |
| Mizoribine |
Selleck Chemicals |
#Cat: S1384 |
| BPTES |
Selleck Chemicals |
#Cat: S7753 |
| 2'‐Deoxyadenosine monohydrate |
Selleck Chemicals |
#Cat: S9351 |
| 2'‐Deoxyguanosine monohydrate |
Selleck Chemicals |
#Cat: S9007 |
| Thymidine |
Selleck Chemicals |
#Cat: S4803 |
| Galiiac acid |
Selleck Chemicals |
#Cat: S4603 |
| Digoxin |
Selleck Chemicals |
#Cat: S4290 |
| Buthionine Sulfoximine |
Sigma‐Aldrich |
#Cat: 415383 |
|
Critical commercial assays
|
| Blood & Cell Culture DNA extraction Kits |
Qiagen |
#Cat: 13323 |
| Cell Tox Green Cytotoxicity Assay |
Promega |
#Cat: G8741 |
| NADP/NADPH Quantitation Colorimetric Kit |
Biovision |
#Cat: K347‐100 |
| CellROX® Orange |
Thermo Fischer Scientific |
#Cat: C10443
|
| GSH‐Glo Glutathione |
Promega |
#Cat: V6911 |
| Dharmafect transfection Reagent 1 |
Thermo Fischer Scientific |
#Cat: T‐2001 |
| Xfect™ Transfection Reagent |
Takara Bio |
631317Z1317N |
| pcDNA™3.1 (+) Mammalian Expression Vector |
Invitrogen |
V79020 |
| Seahorse XF Glycolytic Rate Assay Kit |
Agilent Technologies |
103344‐100 XF |
| Seahorse XFe24 FluxPak mini |
Agilent Technologies |
102342‐100 |
| Seahorse XF RPMI assay medium pack |
Agilent Technologies |
103681‐100 |
|
Experimental models: cell lines
|
| Human: T24 |
American Type Culture Collection |
#Cat: ATCC HTB‐4 |
| Human: UMUC3 |
American Type Culture Collection |
#Cat: ATCC CRL‐1749 |
| Human: J82 |
American Type Culture Collection |
#Cat: ATCC HTB‐1 |
|
Experimental models: oraganisms/strains
|
| BALB/cAJcl‐nu/nu |
CLEA Japan, Inc. |
#Cat: 6496 |
|
Oligonucleotides
|
| Taqman Probe hIDH2 |
Applied Biosystems |
Hs00953879_m1 |
| Taqman Probe hEGLN1 |
Applied Biosystems |
Hs00254392_m1 |
| Taqman Probe hHIF1A |
Applied Biosystems |
Hs00153153_m1 |
| Taqman Probe hGLUT1 |
Applied Biosystems |
Hs00892681_m1 |
| Taqman Probe hG6PD |
Applied Biosystems |
Hs00166169_m1 |
| Taqman Probe hCTPS1 |
Applied Biosystems |
Hs01041852_m1 |
| Taqman Probe hTIGAR |
Applied Biosystems |
Hs00608644_m1 |
| Taqman Probe hTKT |
Applied Biosystems |
Hs0115545_m1 |
| Taqman Probe hPKM2 |
Applied Biosystems |
Hs00987255_m1 |
| Taqman Probe hLDHA |
Applied Biosystems |
Hs03405707_g1 |
| Taqman Probe hDHODH |
Applied Biosystems |
Hs00361406_m1 |
| Taqman Probe hUMPS |
Applied Biosystems |
Hs00923517_m1 |
| Taqman Probe hCTPS2 |
Applied Biosystems |
Hs00219845_m1 |
| Taqman Probe hTYMS |
Applied Biosystems |
Hs00426586_m1 |
| Taqman Probe hIMPDH1 |
Applied Biosystems |
Hs04190080_gH |
| Taqman Probe hATIC |
Applied Biosystems |
Hs00269671_m1 |
| Taqman Probe hPFAS |
Applied Biosystems |
Hs00389822_m1 |
| Taqman Probe hATIC |
Applied Biosystems |
Hs00269671_m1 |
| Taqman Probe hPRPS1 |
Applied Biosystems |
Hs00751338_s1 |
| Taqman Probe hACTB |
Applied Biosystems |
Hs01060665_g1 |
|
Recombinant DNA
|
| siRNA‐hIDH2 target sequence #1 |
Thermo Fischer Scientific |
s227 |
| siRNA‐hIDH2 target sequence #2 |
Thermo Fischer Scientific |
106706 |
| Silencer siRNA Non‐targeting control |
Invitrogen |
#Cat:AM4611 |
| siRNA‐hHIF1A target sequence #1 |
Thermo Fischer Scientific |
s6539 |
| siRNA‐hHIF1A target sequence #2 |
Thermo Fischer Scientific |
s6541 |
|
Software and Algorithms
|
| GraphPad Prism 8 software |
Graph Pad |
N/A |
| Statistical Package of Social Sciences software ver 24.0 |
IBM |
N/A |