(A) Experimental design of Prkci and Prkcz editing in mouse tumor organoids (MTO).
(B) Immunoblot analysis of indicated proteins in MTO-sgPrkci/Prkcz and MTO-sgC (n=3 biological replicates).
(C) qPCR of indicated genes in MTO-sgPrkci/Prkcz and MTO-sgC (n=3 biological replicates). Unpaired t-test. Data shown as mean ± SEM. *p < 0.05, **p< 0.01.
(D) IF for HA (yellow) in MTO-sgPrkci/Prkcz and MTO-sgC. Scale bars, 50 μm.
(E) GSEA plots of the indicated gene set signatures for MTO-sgPrkci/Prkcz versus MTO-sgC (n=3 biological replicates).
(F-J) Subcutaneous injection of MTO-sgPrkci/Prkcz and MTO-sgC in WT mice. Mice were treated twice a week with Veh or PEGPH20 0.0375 mg/kg for 3 weeks (MTO: sgC Veh n=10, sgC PEGPH20-treated n=10, sgPrkci/Prkcz Veh n=10, and sgPrkci/Prkcz PEGPH20-treated n=8). Experimental design (F); Immunohistochemistry (IHC) for HA, Masson’s trichrome, and αSMA staining (G); quantification, one-way ANOVA and post hoc Tukey’s test, data shown as mean ± SEM, (n=8), ***p < 0.001, ****p < 0.0001 (H); tumor volume, two-way ANOVA and post hoc Tukey’s test, data shown as mean ± SEM, ****p < 0.0001 (I) and tumor weight, one-way ANOVA and post hoc Tukey’s test, data shown as mean ± SEM, **p< 0.01 (J). Scale bars, 100 μm. Sac: sacrificed.
(K and L) GSEA from Quant-seq on MTO-sgPrkci/Prkcz PEGPH20-treated tumors (n=4) versus Veh (n=3) using compilation H (MSigDB) (K) and stroma-related signatures (L).
(M) GSEA plots of the indicated gene signatures for MTO-sgPrkci/Prkcz PEGPH20-treated tumors (n=4) versus Veh (n=3).
See also Figure S2.