Table 2.
Common databases, tools, or bioinformatical resources applied in the study of the biosynthesis and function of BCs in biological systems.
| Database | URL | References |
|---|---|---|
| Kyoto Encyclopedia of Genes and Genomes (KEGG) | http://www.genome.jp/kegg/ | Kanehisa and Goto [157] |
| The Human Metabolome Database (HMDB) | https://hmdb.ca/ | Wishart et al. [158]; Wishart et al. [159] |
| BioCyc | https://biocyc.org/ | Karp et al. [160] |
| MetaboAnalyst | https://www.metaboanalyst.ca/home.xhtml | Xia et al. [161] |
| MetaboLights | https://www.ebi.ac.uk/metabolights/index | Haug et al. [162] |
| Golm Metabolome Database (GMD) | http://gmd.mpimp-golm.mpg.de/ | Hummel et al. [163]; Kopka et al. [164] |
| KNApSAcK Metabolomics | http://www.knapsackfamily.com/KNApSAcK/ | Nakamura et al. [165] |
| METLIN | https://metlin.scripps.edu | Guijas et al. [166] |
| Competitive Fragmentation Modeling for Metabolite Identification (CFM-ID) | http://cfmid.wishartlab.com/ | Allen et al. [167]; Wang et al. [168] |
| Plant Metabolic Network (PMN) | https://www.plantcyc.org/ | Hawkins et al. [169] |
| ReSpect for Phytochemicals | http://spectra.psc.riken.jp/ | Sawada et al. [170] |
| Secondary Metabolite Bioinformatics Portal (SMBP) | http://www.secondarymetabolites.org/ | Weber and Kim [171] |
| Electronic BioActive Substances Information System (eBASIS) | https://ebasis.eurofir.org/ | Plumb et al. [172] |