Table 3.
Bioactive peptide sequences and their interactions with potential DPP-IV binding sites.
| Peptide sequence | Mw | Pepsite 2 (p value) a | Binding residues in peptide | Bound residues of DPP-Ⅳ |
|---|---|---|---|---|
| F4 | ||||
| FR | 322.19 | 0.005277 | F1, R2 | Tyr48, Trp627, Trp629b, Gly741, Tyr752 |
| WR | 361.20 | 0.005748 | W1, R2 | Tyr48, Trp627, Trp629b, Tyr752 |
| FGNWR | 679.33 | 0.005428 | G2, N3, W4, R5 | Tyr48, Trp627, Trp629b, His740b, Gly741, ILe742, Ala743, His748, Tyr752 |
| MFK | 425.22 | 0.003096 | M1, F2, K3 | Tyr48, Trp627, Trp629b, Gly741, Tyr752 |
| SFGPR | 562.29 | 0.01877 | G3, P4, R5 | Phe357b, Tyr547b, Pro550, Trp659b, Tyr662b, Asp663, Tyr666b, Thr667, Tyr670 |
| NPPFK | 601.32 | 0.0003259 | P2, P3, F4, K5 | Glu206b, Phe357b, Tyr547b, Pro550, Tyr662b, Tyr666b, Tyr670 |
| CPPSPR | 655.31 | 0.1198 | C1, P5, R6 | Phe357b, Tyr547b, Pro550, Trp629b, Tyr666b, Tyr670, Tyr752 |
| DFR | 436.21 | 0.02662 | D1, F2, R3 | Tyr48, Trp627, Trp629b, His740b, Gly741, ILe742, Ala743, Tyr752 |
| FNFSR | 669.32 | 0.007846 | F1, N2, F3, R5 | Phe357b, Tyr547b, Pro550, Tyr631b, Trp659b, Tyr662b, Asp663, Tyr666b, Thr667, Tyr670 |
| LFFSR | 668.36 | 0.0174 | L1, F2, F3, R5 | Tyr48, Val546, Trp627, Gly628, Trp629b, Ser630b, His740b, Gly741, Ile742, Ala743, Tyr752 |
| GFPSR | 562.29 | 0.001407 | F2, P3, S4, R5 | Tyr48, Trp627, Trp629b, His740b, Gly741, Ile742, Ala743, Tyr752 |
| FK | 293.17 | 0.00525 | F1, K2 | Tyr48, Trp627, Trp629b, Gly741, Tyr752 |
| MR | 305.15 | 0.00785 | M1, R2 | Trp629b, Ser630b, Gly741, Tyr752 |
| FFNSR | 669.32 | 0.005675 | F2, N3, S4, R5 | Tyr48, Trp627, Trp629b, His740b, Gly741, ILe742, Ala743, Tyr752 |
| WPDAR | 643.31 | 0.01173 | W1, D3, A4, R5 | Tyr48, Trp627, Trp629b, His740b, Gly741, ILe742, Ala743, His748, Tyr752 |
| LSGFPR | 675.37 | 0.02638 | L1, F4, P5, R6 | Phe357b, Val546, Tyr547b, Pro550, Trp627, Gly628, Trp629b, Ser630b, Tyr631b, Trp659b, Tyr662b, Asp663, Tyr666b, Thr667, Tyr670 |
| QFLR | 562.32 | 0.0202 | Q1, F2, L3 | Tyr48, Trp627, Trp629b, Ser630b, Val653, Tyr752 |
| FLK | 406.26 | 0.00615 | F1, L2, K3 | Tyr48, Trp627, Trp629b, Tyr752 |
| AFPYK | 624.33 | 0.0008243 | A1, F2, P3, Y4 | Tyr48, Val546, Trp627, Gly628, Trp629b, Ser630b, Gly741, Tyr752 |
| F6 | ||||
| FFK | 440.24 | 0.003712 | F1, F2, K3 | Tyr48, Trp627, Trp629b, Gly741, Tyr752 |
| SFR | 408.21 | 0.009356 | S1, F2, R3 | Tyr48, Trp627, Trp629b, Tyr752 |
| CPPTPR | 669.33 | 0.08718 | T4, P5, R6 | Tyr48, Trp627, Trp629b, Tyr752 |
Note:
Binding site analysis by Pepsite 2 software (http://pepsite2.russelllab.org/).
Binding residues on the DPP-IV active sites.