| Critical commercial assays |
|
| Illumina Infinium CoreExome-24 v1.0 |
Illumina |
https://support.illumina.com/array/array_kits/humancoreexome-24-beadchip-kit/downloads.html |
| Illumina Infinium CoreExome-24 v1.1 |
Illumina |
https://support.illumina.com/array/array_kits/humancoreexome-24-beadchip-kit/downloads.html |
|
| Deposited data |
|
| HGDP |
Li et al. 200841
|
https://cephb.fr/en/hgdp_panel.php |
| Haplotype Reference Consortium |
McCarthy et al. 201642
|
http://www.haplotype-reference-consortium.org/ |
| TOPMed |
Taliun et al. 202143
|
https://topmed.nhlbi.nih.gov/data-sets |
| UKBiobank |
Bycroft et al. 20174
|
https://biobank.ndph.ox.ac.uk/showcase/ |
| GWAS Catalog |
Buniello et al. 20191
|
https://www.ebi.ac.uk/gwas/downloads |
|
| Software and algorithms |
|
| plink v1.9 |
Purcell et al. 200744
|
https://www.cog-genomics.org/plink/1.9/ |
| KING |
Manichaikul et al. 201045
|
http://www.kingrelatedness.com/ |
| SAIGE |
Zhou et al. 202036
|
https://github.com/weizhouUMICH/SAIGE |
| VICES |
Zajac et al. 201946
|
https://github.com/gjmzajac/vices |
| PheWAS R package |
Carroll et al. 201416
|
https://github.com/PheWAS/PheWAS |
| Pheweb |
Gagliano et al. 202015
|
https://github.com/statgen/pheweb |
| GenomeStudio |
Illumina |
https://support.illumina.com/array/array_software/genomestudio/downloads.html |
| zCall |
Goldstein et al. 201247
|
https://github.com/jigold/zCall |
| ADMIXTURE v1.3.0 |
Alexander et al. 200948
|
https://dalexander.github.io/admixture/ |
| BLAT |
Kent49
|
http://genome.ucsc.edu |
| FlashPCA2 |
Abraham et al. 201750
|
https://github.com/gabraham/flashpca |
