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. 2023 Jan 24;19(3):1050–1062. doi: 10.1021/acs.jctc.2c00823

Table 1. Four Test Systems Used in This Worka.

system system volume (nm3) no. atoms sphere radius (Å) sphere atoms (Cα)
water box 64.02 6282 none none
HSP90 223.90 22446 6 Leu48, Gly97
trypsin 226.50 22681 6 Gly226, Ala221
MUP-I 210.37 21170 6 Lys55, Leu117
a

Listed with the volume of each system, the number of atoms after equilibration (n.b. this may change during the simulation), the radius used to define the spherical region of interest for water insertion and deletion moves, and the backbone Cα atoms whose midpoint was used to define the center of the GCMC sphere (residue IDs as per the crystal structures).