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. 2023 Jan 24;19(3):1080–1097. doi: 10.1021/acs.jctc.2c01078

Table 5. Gramicidin: Inline graphica in kcal/mol and Average Backbone RMSD in Å between the Surrogate LM and Their Reoptimized Counterparts at B3LYP/6-31G(d,p).

Surrogate MAEInline graphic Av bb-RMSD NLMb
AMOEBA 4.3 ± 3.3 0.29 ± 0.11 48
GAFF 17.9 ± 2.0 0.25 ± 0.05 28
a

As defined in Table 2.

b

NLM is the number of LM reoptimized within 5 kcal/mol from the putative GM, separated at least by 10–4 kcal/mol and 0.75 heavy-atom RMSD.