Figure 1: Model of operon coupling by sliding RNAP.
(i) An RNAP molecule (green) terminates transcription of the primary operon (blue), and (ii) starts sliding along the DNA molecule with a diffusion constant D. (iii) While sliding, the RNAP can either dissociate from the DNA with rate koff, or bind σ70 (gray) with rate kb[σ70]. (iv) After binding of σ70, the RNAP-σ70 complex can either dissociate with a rate koff,s, or find the promoter (bent arrow) for the secondary operon (pink), which is located is at a distance d along the DNA from the primary operon terminator (T).
