Skip to main content
. 2022 Dec 28;11:e80380. doi: 10.7554/eLife.80380

Appendix 2—table 1. Seven single-cell RNA sequencing studies of different tissues where age-related increase in transcriptional noise was measured.

The number of cells (N. cells) in the table is the size of the dataset prior to quality control. The Noise column states whether an increase in transcriptional noise was reported in some/all cell types in the original articles. The Scope column summarizes the cell types where age-related increase in transcriptional noise was reported. The Method column specifies how transcriptional noise was measured in the original articles.

Dataset Tissue Organism N. cells Noise Scope Method
Enge et al., 2017 Pancreas Human 2544 Yes In Beta cells. (1) Biological over technicalvariation, (2) wholetranscriptome-based Euclidean distance to cell typemean, (3) invariant gene-based Euclidean distance to celltype mean.
Martinez-Jimenez et al., 2019 CD4+ T cells Mouse 1513 Yes Single cell

type studied.
Percentage of cells expressingthe core activation program.
Angelidis et al., 2019 Lung Mouse 14,813 Yes In most cell types. Distance to cell type mean.
Kimmel et al., 2019 Lung, spleen, kidney Mouse 30,255
30,512
29,815
Yes In many cell types. (1) Overdispersion of genes, (2) invariant gene-based Euclidean distance to cell type mean, (3) whole transcriptome--based Manhattan distance to cell type mean.
Ximerakis et al., 2019 Brain Mouse 37,069 No Differences in magnitude and directionality between cell types. Coefficient of variation of (1) all genes, (2) mitochondrial genes, (3) ribosomal genes.
Salzer et al., 2018 Dermal fibroblasts Mouse 731 Yes Single cell

type studied.
Compactness of clusters on PCA plot.
Solé-Boldo et al., 2020 Skin Human 22,142 Yes In dermal fibroblasts. Less clear GO (Gene Ontology) annotations.