Appendix 2—table 1. Seven single-cell RNA sequencing studies of different tissues where age-related increase in transcriptional noise was measured.
The number of cells (N. cells) in the table is the size of the dataset prior to quality control. The Noise column states whether an increase in transcriptional noise was reported in some/all cell types in the original articles. The Scope column summarizes the cell types where age-related increase in transcriptional noise was reported. The Method column specifies how transcriptional noise was measured in the original articles.
| Dataset | Tissue | Organism | N. cells | Noise | Scope | Method |
|---|---|---|---|---|---|---|
| Enge et al., 2017 | Pancreas | Human | 2544 | Yes | In Beta cells. | (1) Biological over technicalvariation, (2) wholetranscriptome-based Euclidean distance to cell typemean, (3) invariant gene-based Euclidean distance to celltype mean. |
| Martinez-Jimenez et al., 2019 | CD4+ T cells | Mouse | 1513 | Yes | Single cell type studied. |
Percentage of cells expressingthe core activation program. |
| Angelidis et al., 2019 | Lung | Mouse | 14,813 | Yes | In most cell types. | Distance to cell type mean. |
| Kimmel et al., 2019 | Lung, spleen, kidney | Mouse | 30,255 30,512 29,815 |
Yes | In many cell types. | (1) Overdispersion of genes, (2) invariant gene-based Euclidean distance to cell type mean, (3) whole transcriptome--based Manhattan distance to cell type mean. |
| Ximerakis et al., 2019 | Brain | Mouse | 37,069 | No | Differences in magnitude and directionality between cell types. | Coefficient of variation of (1) all genes, (2) mitochondrial genes, (3) ribosomal genes. |
| Salzer et al., 2018 | Dermal fibroblasts | Mouse | 731 | Yes | Single cell type studied. |
Compactness of clusters on PCA plot. |
| Solé-Boldo et al., 2020 | Skin | Human | 22,142 | Yes | In dermal fibroblasts. | Less clear GO (Gene Ontology) annotations. |