Table 4.
Circadian clock protein candidates identified via searching available NCBI data
| Arthropod | Mammalian | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Phylum | Organism | CLK | CYC | TIM | PER | CRY1 | CRY2 | PDP1e | VRI | REV-ERBa | RORa |
| Ar | Acartia tonsa | - | - | - | - | - | - | - | - | - | - |
| Ar | Acartia clausii | - | - | - | - | - | - | - | - | - | - |
| Ar | Calanus helgolandicus | - | - | - | - | - | - | - | - | - | - |
| Ar | Centropages hamatus | - | - | - | - | - | - | - | - | - | - |
| Ar | Temora longicornis | - | - | - | - | - | - | - | NH | - | YES |
| Ar | Crangon crangon | - | - | - | YES | YES | - | - | - | - | - |
| Ar | Corystes sp. | - | - | - | - | - | - | - | - | - | - |
| Ar | Hyperia sp. | ND | ND | ND | ND | ND | ND | ND | ND | - | - |
| Ar | Podon leuckartii | - | - | - | - | - | - | - | - | - | - |
| Ar | Evadne nordmanni | - | - | - | - | - | - | ND | - | - | - |
| An | Poecilochaetus sp. | - | - | ND | - | - | - | - | - | - | - |
| An | Magelona mirabilis | - | - | - | - | - | - | - | - | - | - |
| Ph | Phoronis muelleri | YES | YES | NH | YES | YES | YES | - | NH | - | - |
| Ch | Oikopleura dioica | - | - | NH | YES | YES | - | - | NH | YES | YES |
| Ec | Asterias rubens | - | - | - | YES | - | - | - | - | - | YES |
| Cn | Rathkea octopunctata | - | - | ND | ND | ND | - | - | ND | ND | ND |
| Cn | Phialella quadrata | - | - | ND | ND | ND | - | - | ND | ND | ND |
These were proteins for which candidates were not discovered by our OrthoFinder-based workflow. YES - candidate sequence found; NH - candidate not found because no homolog detected in the searched NCBI data; ND - candidate not found because no data was available on NCBI; ‘-’ - candidate discovered already by the OrthoFinder-based workflow. The bait protein sequence which was used to identify the candidates is indicated as the column header. ‘Arthropod’ and ‘Mammalian’ refer to the type of circadian clock the bait protein sequence originates from (Drosophila melanogaster and Mus musculus respectively). Circadian clock protein abbreviations as in Table 2. Phylum abbreviations: Ar - Arthropoda, An - Annelida, Ph - Phoronida, Ch - Chordata, Ec - Echonodermata, Cn - Cnidaria