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. 2023 Jan 5;299(2):102873. doi: 10.1016/j.jbc.2023.102873

Table 2.

Steady-state kinetic parameters of cancer-associated IDH1/2 variants for 2OG and selected 2OG derivatives

Entry 2OG derivative a,bParameter R132H IDH1 R172K IDH2 R140Q IDH2
A graphic file with name fx34.gif kcatapp [s-1] 0.72 ± 0.04 0.72 ± 0.04 0.49 ± 0.04
Kmapp [mM] 0.85 ± 0.19 0.35 ± 0.04 5.1 ± 1.2
kcat/Km [mM-1·s-1] 0.85 ± 0.22 2.1 ± 0.3 0.10 ± 0.03
B graphic file with name fx35.gif kcatapp [s-1] 6.9 ± 0.4 4.8 ± 0.2 5.4 ± 0.3
Kmapp [mM] 3.7 ± 0.1 4.2 ± 0.4 2.0 ± 0.8
kcat/Km [mM-1·s-1] 1.9 ± 0.1 1.2 ± 0.1 2.8 ± 1.1
C graphic file with name fx36.gif kcatapp [s-1] 8.3 ± 0.6 3.9 ± 0.2 8.6 ± 0.4
Kmapp [mM] 8.5 ± 1.2 15 ± 1 5.0 ± 0.5
kcat/Km [mM-1·s-1] 0.99 ± 0.16 0.26 ± 0.03 1.7 ± 0.2
D graphic file with name fx37.gif kcatapp [s-1] 12 ± 1 2.7 ± 0.2 8.9 ± 0.8
Kmapp [mM] 13 ± 1 11 ± 5 9.4 ± 2.3
kcat/Km [mM-1·s-1] 0.98 ± 0.06 0.24 ± 0.11 0.95 ± 0.25
E graphic file with name fx38.gif kcatapp [s-1] 9.2 ± 0.4 7.8 ± 1.8 9.7 ± 0.4
Kmapp [mM] 5.7 ± 3.3 16 ± 5 3.8 ± 0.8
kcat/Km [mM-1·s-1] 1.6 ± 1.0 0.50 ± 0.19 2.6 ± 0.6
F graphic file with name fx39.gif kcatapp [s-1] 5.7 ± 0.6 1.9 ± 0.2 7.2 ± 0.6
Kmapp [mM] 7.2 ± 0.5 25 ± 1 7.5 ± 3.6
kcat/Km [mM-1·s-1] 0.80 ± 0.10 0.079 ± 0.007 0.97 ± 0.48
G graphic file with name fx40.gif kcatapp [s-1] 5.3 ± 0.4 3.9 ± 0.3 6.0 ± 0.5
Kmapp [mM] 12 ± 1 25 ± 5 38 ± 3
kcat/Km [mM-1·s-1] 0.44 ± 0.06 0.16 ± 0.04 0.16 ± 0.02
cH graphic file with name fx41.gif kcatapp [s-1] 3.4 ± 0.3 3.7 ± 0.2 8.0 ± 0.6
Kmapp [mM] 15 ± 2 16 ± 1 23 ± 7
kcat/Km [mM-1·s-1] 0.23 ± 0.04 0.23 ± 0.02 0.35 ± 0.11
I graphic file with name fx42.gif kcatapp [s-1] 5.7 ± 0.4 3.0 ± 0.2 5.8 ± 0.6
Kmapp [mM] 12 ± 5 16 ± 2 14 ± 2
kcat/Km [mM-1·s-1] 0.47 ± 0.21 0.19 ± 0.03 0.43 ± 0.08

a Mean of two independent runs, each composed of technical duplicates (n = 2; mean ± SD).

b IDH1/2 variant assays monitoring NADPH turnover were performed as described in the Experimental procedures section using 0.03 μM IDH1/2 variant and 50 μM NADPH in reaction buffer (100 mM Tris, pH 8.0, 0.005%v/v tween-20, 0.1 mg/mL BSA, 0.2 mM DTT, 20 mM MgCl2, 150 mM NaCl).

c mixture of racemic diastereomers, dr (cis:trans) = 2.5:1.