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. 2023 Jan 25;26(2):106043. doi: 10.1016/j.isci.2023.106043
REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial and virus strains

Paenibacillus glucanolyticus DSMZ DSM-5162

Chemicals, peptides, and recombinant proteins

Trypsin soy broth (TSB) Difco Laboratories Cat#211825
H2O2 30% (w/w) Sigma-Aldridge Cat#7722-84-1
Erythromycin Sigma Cat#E5389
NaCl Merck Cat#1.06404
ATTO-TEC-633 GmbH AD-633
PBS Sartorius Cat#02-023-1A
DMSO Sigma Cat#67-68-5
UltraPure™ Agarose Invitrogen Cat#16500100
Green Hot Start High-Fidelity 2X Master Mix Invitrogen Cat#13001012

Critical commercial assays

Microbiome DNA Purification kit Invitrogen™ Cat#A29790
300 MESH copper grid Electron Microscopy Sciences Cat#CF300CUUL
ATP/ADP ratio assay kit Sigma Cat#MAK135
QIAquick PCR Purification Kit Qiagen Cat#28104
MiSeq Reagent Kit v2 Illumina Cat#MS-102-2002

Oligonucleotides

GGACAATATGGCAAACGTCA Flg6-F N/A
CGTCCGGTCAAAATCCTTAT Flg6-R N/A
TCGTCGGCAGCGTCAGATGTGTATAAG
AGACAGGGACAATATGGCAAACGTCA
Flg6-F+Adaptor N/A
GTCTCGTGGGCTCGGAGATGTGTATAA
GAGACAGCGTCCGGTCAAAATCCTTAT
Flg6-R+Adaptor N/A

Software and algorithms

SPAdes genome assembler v3.11 http://bioinf.spbau.ru/spades/ RRID:SCR_000131
QUAST- Version; 5.0.1 http://bioinf.spbau.ru/quast RRID:
Prokka 1.13.3 http://www.vicbioinformatics.com/software.prokka.shtml RRID:SCR_014732
Snippy 4.3.5 Github https://github.com/tseemann/snippy
Jalview Jalview https://www.jalview.org/
Geneious Geneious by Dotmatics https://www.geneious.com
MAFFT V3.705 Katoh et al. (2009)42 https://mafft.cbrc.jp/alignment/server/
RAxML version 8.2.11 Stamatakis, A. (2014)43 https://raxml-ng.vital-it.ch/#/
FASTML Ashkenazy et al., (2012)38 http://fastml.tau.ac.il/
GraphPad Prism GraphPad https://www.graphpad.com/
Python 3.7 Python Software Foundation https://www.python.org/downloads/
SeqIO, biopython 1.78 Anaconda Inc https://anaconda.org/anaconda/biopython

Other

NCBI web site https://www.ncbi.nlm.nih.gov/nuccore/CP015286.1?report=fasta GenBank: CP015286.1