Figure 2.

Analysis of atomistic MD simulation trajectories of four α_IIbβ₃ integrin conformations. (a) The Cα RMSD of the four α_IIbβ₃ integrins relative to the corresponding input conformations over the course of 500 ns of atomistic MD simulations. (b) Radius of gyration of the four α_IIbβ₃ integrins over the course of 500 ns of atomistic MD simulations. (c) RMSF, computed for each integrin domain relative to its average position during the atomistic MD simulations. Error bars indicate the standard deviations from the mean. To see this figure in color, go online.