Figure 3.

Accuracy by ancestry for simulated sequence data with four-way admixture

The y axis is the squared correlation between the true and inferred ancestry dose for a single ancestry, averaged across four replicate simulations. Error bars (±2 standard errors) are shown as gray lines. The ancestry is shown on the x axis (AFR is simulated West African, EUR is simulated European, CHB is simulated Han Chinese, JPT is simulated Japanese). The simulated sequence data have 100 admixed individuals and 400 individuals in each of the four reference panels. Results are averaged over four replicate simulations. MOSAIC could not analyze these data within the available 384 GB of computer memory