Table 2.
Oligonucleotides used in the study
| Target | Primer set sequence 5′–3′ | Source | |
|---|---|---|---|
| Forward | Reverse | ||
| stx-2a | ACCCCACCGGGCAGTT | GGTCAAAACGCGCCTGATA | [54] |
| espA | TCAGAATCGCAGCCTGAAAA | GAAGGATGAGGTGGTTAAGCT | [14] |
| ler | CGACCAGGTCTGCCCTTCT | GCGCGGAACTCATCGAAA | [14] |
| hcp-2 | GAACGTCAGGCAGTTTCCGT | GGCCACGCTATCTGGTGAAA | [30] |
| rpoA | GCGCTCATCTTCTTCCGAAT | CGCGGTCGTGGTTATGTG | [14] |
| Bacteroides (RNA 16S) | CGATGGATAGGGGTTCTGAGAGGA | GCTGGCACGGAGTTAGCCGA | [55] |
| Prevotella (RNA 16S) | CACCAAGGCGACGATCA | GGATAACGCCYGGACCT | [55] |
| Delta e Gamma proteobacteria (RNA 16S) | GCTAACGCATTAAGTRYCCCG | GCCATGCRGCACCTGTCT | [56] |
| Eubacteria (Eub – RNA 16S) | ACTCCTACGGGAGGCAGCAGT | ATTACCGCGGCTGCTGGC | [57] |
| Firmicutes (RNA 16S) | TGAAACTYAAAGGAATTGACG | ACCATGCACCACCTGTC | [56] |
| Bacteroidetes (RNA 16S) | CRAACAGGATTAGATACCCT | GGTAAGGTTCCTCGCGTAT | [35] |
| Bifidobacterium (RNA 16S) | TCGCGTC(C/T)GGTGTGAAAG | CCACATCCAGC(A/G)TCCAC′ | [58] |
|
Lactobacillus (Lactobacillaceae) (RNA 16S) |
AGCAGTAGGGAATCTTCCA | CACCGCTACACATGGAG | [58] |