Table 2.

Counts of differentially expressed genes in alfalfa with AM fungus, aphids and pathogen treatments.

Groups	Control group	Treat group	Differentially Expressed genes number	Up-regulated gene number	Down-regulated gene number
NMA−P− vs. AMA−P−	NMA−P−	AMA−P−	631	234	397
NMA−P− vs. NMA+P−	NMA−P−	NMA+P−	398	176	222
NMA−P− vs. NMA−P+	NMA−P−	NMA−P+	1,683	1,267	416
NMA−P− vs. NMA+P+	NMA−P−	NMA+P+	3,628	2,954	674
AMA−P− vs. AMA+P−	AMA−P−	AMA+P−	396	257	139
AMA−P− vs. AMA-P+	AMA−P−	AMA−P+	3,019	2,217	802
AMA−P− vs. AMA+P+	AMA−P−	AMA+P+	2058	1,545	513
NMA+P− vs. AMA+P−	NMA+P-	AMA+P−	668	486	182
NMA−P+ vs. AMA-P+	NMA−P+	AMA−P+	802	309	493
NMA+P+ vs. AMA+P+	NMA+P+	AMA+P+	344	114	230