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. 2023 Feb 6;9(2):238–254. doi: 10.1038/s41477-022-01333-5

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 2 — a) Plot of f-branch statistics (f_b) showing excess allele sharing between branches of the Sphagnum phylogeny (y-axis) and extant species of Sphagnum (x-axis). Dotted lines on the y-axis represent the most recent common ancestor for branches underneath each line. The maximum likelihood tree generated from 16,171 orthologs was used to calculate the f-branch statistic. Matrix entries colored by f-branch values are significantly different (P<0.05) than zero. Tests that are inconsistent with the given tree topology are shaded in grey. b) D_min statistics for trios of haploid Sphagnum species (same subgenus, different subgenera, all species) estimated from SNP data. Histograms represent the proportion of trios for which D_min is significantly different from zero (P<0.05; <0.01; <0.001) based on shading (lightest to darkest, respectively). Dots represent D_min values for significant trios. c) Phylogenetic relationships of Sphagnum resequencing samples (sample ID appended to species name) estimated from maximum likelihood ortholog genealogies using ASTRAL. Branch support values reflect local posterior probability and branch lengths are in coalescent units.

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