Table 1.

Functional categories of all differentially expressed coding sequences.

Class	Class	Number of CDS	Percent of CDS	Number of Reads	Percent of Reads
uk	Unknown	11870	30.10474524	9603035.74	3.138631215
s	Secreted	7358	18.66139136	118828691.8	38.83766045
te	Transposable element	2885	7.316949453	2672948.89	0.87361966
uc	Unknown, conserved	2325	5.896675036	42390319.04	13.85474158
st	Signal transduction	2002	5.077481042	9833046.42	3.213807307
tm	Transcription machinery	1961	4.973496665	11671193.57	3.814582539
pe	Protein export	1230	3.119531309	8288525.8	2.709000207
tr	Transporters/storage	875	2.219178777	4005011.26	1.30898746
ps	Protein synthesis	826	2.094904766	35877305.11	11.72604505
bac	Bacterial	800	2.028963453	1206145.12	0.394213333
pm	Protein modification	774	1.963022141	7113918.29	2.325094544
nr	Nuclear regulation	762	1.932587689	3512643.3	1.148063197
met/energy	Metabolism, energy	748	1.897080829	6772487.49	2.21350219
cs	Cytoskeletal	683	1.732227548	9305463.74	3.041373557
met/lipid	Metabolism, lipid	679	1.722082731	3831681.35	1.252336763
prot	Proteasome machinery	679	1.722082731	4222526.26	1.380079496
extmat	Extracellular matrix	558	1.415202009	4479967.54	1.464220934
met/carb	Metabolism, carbohydrate	421	1.067742017	3411249.59	1.11492394
detox	Detoxification	419	1.062669609	2614503.07	0.854517381
met/aa	Metabolism, amino acid	384	0.973902458	4133084.08	1.350846447
imm	Immunity	340	0.862309468	7502000.5	2.451934324
met/nuc	Metabolism, nucleotide	281	0.712673413	1291648.15	0.422158921
met/int	Metabolism, intermediate	191	0.484415024	995312.41	0.325305318
tf	Transcription factor	166	0.421009917	789597.62	0.258070032
ne	Nuclear export	77	0.195287732	530713.8	0.173457118
storage	Storage	69	0.174998098	1009052.91	0.329796228
protinhib	Protein inhibition	46	0.116665399	5481.05	0.001791412
vir	Viral	10	0.025362043	18030.95	0.005893189