Table 6.
Targets predicted for SLCMV derived small RNAs/microRNAs from the transcriptome of the host plant M. esculenta
| Virus sRNAs | Target Accession No | Alignment Score | Target inhibition | Target Function |
|---|---|---|---|---|
| SLCMV sRNA1 | DB933423 | 3.5 | Cleavage | Aldehyde dehydrogenase |
| SLCMV sRNA1 | DB941541 | 3.5 | Cleavage | Nitrite oxidoreductase beta-subunit |
| SLCMV sRNA3 | TC1305 | 2 | Cleavage | ADP-ribosylation factor 1 |
| SLCMV sRNA3 | FG806228 | 2.5 | Cleavage | ARF1-like GTP-binding protein |
| SLCMV sRNA3 | TC11819 | 3.5 | Cleavage | Zinc finger (C3HC4-type RING finger) protein-like |
| SLCMV sRNA3 | DV456692 | 3.5 | Cleavage | Eukaryotic translation initiation factor |
| SLCMV sRNA3 | TC1732 | 3.5 | Cleavage | 60 s acidic ribosomal protein-like protein |
| SLCMV sRNA3 | TC3840 | 3.5 | Cleavage | 60 s acidic ribosomal protein-like protein |
| SLCMV sRNA3 | TC2154 | 3.5 | Cleavage | Glutamine synthetase precursor |
| SLCMV sRNA3 | DV454971 | 3.5 | Cleavage | NADH-ubiquinone oxidoreductase chain 1 |
| SLCMV sRNA4 | CK643326 | 2.5 | Cleavage | Phosphate transporter |
| SLCMV sRNA4 | TC2216 | 3 | Cleavage | Cytosine transporter |
| SLCMV sRNA4 | DV455651 | 3 | Cleavage | Phosphate transporter |
| SLCMV sRNA4 | DB933778 | 3.5 | Cleavage | Zinc finger protein 780B |
| SLCMV sRNA4 | TC351 | 3.5 | Cleavage | Senescence-associated protein |
| SLCMV sRNA4 | DB923868 | 3.5 | Cleavage | Phosphate transporter |
| SLCMV sRNA4 | DV447769 | 3.5 | Cleavage | GA10363-PA |
| SLCMV sRNA5 | TC3915 | 3.5 | Cleavage | Phosphoglycerate kinase |
| SLCMV sRNA5 | TC11748 | 3.5 | Cleavage | Phosphoglycerate kinase |
| SLCMV sRNA6 | DB953267 | 3 | Cleavage | Amino acid permease family protein |
| SLCMV sRNA6 | DB952321 | 3.5 | Cleavage | Peptide synthetase |
| SLCMV sRNA6 | TC9642 | 3.5 | Cleavage | E3 ubiquitin-protein ligase CHIP |
| SLCMV sRNA6 | FF535522 | 3.5 | Cleavage | Cytochrome b5 isoform Cb5-A |
| SLCMV sRNA6 | TC380 | 3.5 | Cleavage | Cytochrome b5 isoform Cb5-A |
| SLCMV sRNA7 | TC1305 | 3 | Cleavage | ADP-ribosylation factor 1 |
| SLCMV sRNA7 | DB950702 | 3 | Translation | Predicted protein |
| SLCMV sRNA7 | TC1732 | 3 | Cleavage | 60 s acidic ribosomal protein-like protein |
| SLCMV sRNA7 | TC3840 | 3 | Cleavage | 60 s acidic ribosomal protein-like protein |
| SLCMV sRNA7 | DV456692 | 3.5 | Cleavage | Eukaryotic translation initiation factor |
| SLCMV sRNA7 | FG806228 | 3.5 | Cleavage | ARF1-like GTP-binding protein |
| SLCMV sRNA7 | TC2154 | 3.5 | Cleavage | Glutamine synthetase precursor |
| SLCMV sRNA7 | DV454971 | 3.5 | Cleavage | NADH-ubiquinone oxidoreductase chain 1 |
| SLCMV sRNA7 | TC9497 | 3.5 | Cleavage | Starch branching enzyme I precursor |