Table 1. Viruses with the highest identity to the nucleotide sequence of one or more gene segments of Av1955.
| Genome segment | Identity to the eight genome segments of Av1955, %a | |||||||
|---|---|---|---|---|---|---|---|---|
| Isolates in 2013–2014b | Viruses with the highest identityb | Av1955 | ||||||
| Av39 | Av240 | Av154 | Eg20616 | Av1210 | Spg119 | Av1534 | ||
| H3N6 | H5N1-Ind | H5N1-Eur | H5N1 | H5N1 | H5N1 | H5N1 | ||
| PB2 | 93.2 | 85.2 | 85.3 | 85.2 | 85.2 | 98.0 | 85.0 | 100.0 |
| PB1 | 87.6 | 91.3 | 95.9 | 96.0 | 97.4 | 96.7 | 97.9 | 100.0 |
| PA | 90.9 | 87.6 | 96.0 | 95.3 | 96.8 | 95.4 | 98.2 | 100.0 |
| HA | 53.8 | 87.0 | 95.2 | 94.6 | 94.4 | 97.7 | 93.8 | 100.0 |
| NP | 90.3 | 93.5 | 97.0 | 96.7 | 96.6 | 98.3 | 96.6 | 100.0 |
| NA | 54.0 | 87.7 | 96.2 | 95.0 | 97.3 | 96.0 | 95.5 | 100.0 |
| M | 90.4 | 98.1 | 93.8 | 98.9 | 93.3 | 97.0 | 93.4 | 100.0 |
| NS | 88.8 | 93.0 | 97.2 | 92.4 | 97.9 | 98.5 | 97.2 | 100.0 |
Notes:
a
“Bold” indicates the highest identity to Av1955 among Av39, Av154, and Av240. Bold and underlined indicate the highest identity to Av1955 among viruses in the EpiFlu database of GISAID with whole-genome sequence.
b
Virus short name: Av39, A/duck/East Java/Av39/2013; Av240, A/chicken/East Java/Av240/2014; Av154, A/turkey/East Java/Av154/2013; Eg20616, A/eagle/Jakarta Timur/20616-206-III/2016; Av1210, A/chicken/East Java/Av1210/2017; Spg119, A/chicken/East Java/Spg119/2018; and Av1534, A/chicken/East Java/Av1534/2019.