Table 2.
Illumina® RPIP mNGS panel positive microorganisms.
| Illumina® RPIP mNGS Panel | Microorganism Classification |
mNGS Positive |
|---|---|---|
| Moraxella catarrhalis | Bacteria | 12 (41%) |
| Dolosigranulum pigrum | Bacteria | 12 (41%) |
| Haemophilus influenzae | Bacteria | 9 (31%) |
| Streptococcus pneumoniae | Bacteria | 9 (31%) |
| Stenotrophomonas maltophilia | Bacteria | 7 (24%) |
| Pseudomonas aeruginosa | Bacteria | 6 (21%) |
| Staphylococcus aureus | Bacteria | 5 (17%) |
| Corynebacterium pseudodiphtheriticum | Bacteria | 4 (14%) |
| Human rhinovirus A | Virus | 4 (14%) |
| Influenza A virus (H3N2) | Virus | 4 (14%) |
| Corynebacterium propinquum | Bacteria | 3 (10%) |
| Human coronavirus OC43 | Virus | 3 (10%) |
| Human metapneumovirus | Virus | 3 (10%) |
| Ochrobactrum anthropi | Bacteria | 3 (10%) |
| Prevotella melaninogenica | Bacteria | 3 (10%) |
| Respiratory syncytial virus B | Virus | 3 (10%) |
| Rothia mucilaginosa | Bacteria | 3 (10%) |
| Streptococcus mitis | Bacteria | 3 (10%) |
| Actinomyces graevenitzii | Bacteria | 2 (7%) |
| Alternaria alternata | Fungus | 2 (7%) |
| Campylobacter concisus | Bacteria | 2 (7%) |
| Capnocytophaga leadbetteri | Bacteria | 2 (7%) |
| Cytomegalovirus (CMV) | Virus | 2 (7%) |
| Gemella haemolysans | Bacteria | 2 (7%) |
| Human parainfluenza virus 1 | Virus | 2 (7%) |
| SARS-CoV-2 (2019-nCoV) | Virus | 2 (7%) |
| Veillonella parvula | Bacteria | 2 (7%) |
| Achromobacter xylosoxidans | Fungus | 1 (3%) |
| Actinomyces naeslundii | Fungus | 1 (3%) |
| Coxsackievirus A | Virus | 1 (3%) |
| Enterovirus D68 | Virus | 1 (3%) |
| Fusarium proliferatum | Fungus | 1 (3%) |
| Fusobacterium necrophorum | Fungus | 1 (3%) |
| Haemophilus haemolyticus | Bacteria | 1 (3%) |
| Haemophilus parainfluenzae | Bacteria | 1 (3%) |
| Human parainfluenza 4 virus | Virus | 1 (3%) |
| Human parainfluenza virus 2 | Virus | 1 (3%) |
| Human parainfluenza virus 3 | Virus | 1 (3%) |
| Human rhinovirus C | Virus | 1 (3%) |
| Influenza A virus (H1N1) | Virus | 1 (3%) |
| Neisseria flavescens | Bacteria | 1 (3%) |
| Neisseria lactamica | Bacteria | 1 (3%) |
| Pseudomonas stutzeri | Bacteria | 1 (3%) |
| Streptococcus intermedius | Bacteria | 1 (3%) |