Table 1.

Effective reads data for subsequent analysis after quality control.

Sample Name	Raw Reads *	Clean Reads *	Base (nt)	AvgLen (nt) *	Effective (%) *
HvL1.1	18,434	16,712	24,823,416	1485	90.66
HvL1.2	13,733	12,297	18,259,102	1484	89.54
HvL1.3	12,142	10,472	15,560,783	1485	86.25
HvL1.4	16,263	14,725	21,871,158	1485	90.54
SbL1.1	16,291	14,668	21,773,693	1484	90.04
SbL1.2	20,232	18,538	27,167,447	1465	91.63
SbL1.3	23,156	19,666	29,188,401	1484	84.93
SbL1.4	23,467	21,067	31,264,901	1484	89.77
ZmL1.1	17,639	15,895	23,578,489	1483	90.11
ZmL1.2	10,148	9020	13,191,119	1462	88.88
ZmL1.3	12,649	10,831	15,562,182	1436	85.63
ZmL1.4	13,328	12,007	17,818,003	1483	90.09
CrB1.1	26,445	23,292	34,155,876	1466	88.08
CrB1.2	22,652	20,542	30,485,052	1484	90.69
CrB1.3	18,589	16,033	23,804,488	1484	86.25
CrB1.4	14,176	12,932	18,909,984	1462	91.22
HvL2.1	12,065	11,046	16,295,806	1475	91.55
HvL2.2	15,120	13,924	20,641,745	1482	92.09
HvL2.3	25,269	21,263	31,586,883	1485	84.15
HvL2.4	21,157	19,133	28,414,494	1485	90.43
SbL2.1	15,491	13,452	19,895,164	1478	86.84
SbL2.2	15,980	14,028	20,809,492	1483	87.78
SbL2.3	18,850	16,365	24,214,434	1479	86.82
SbL2.4	25,471	22,426	33,299,817	1484	88.05
ZmL2.1	12,346	11,205	16,617,495	1483	90.76
ZmL2.2	19,422	17,006	25,168,430	1479	87.56
ZmL2.3	17,704	16,464	24,431,320	1483	93
ZmL2.4	13,393	12,090	17,803,176	1472	90.27
CrB2.1	25,248	21,817	32,396,921	1484	86.41
CrB2.2	13,162	11,940	17,728,360	1484	90.72
CrB2.3	16,103	14,615	21,684,846	1483	90.76
CrB2.4	22,175	20,180	29,957,818	1484	91
Total	568,300	505,651	748,360,295	47319	2852.5

* Raw reads represent the number of original reads sequenced by PacBio. Clean reads are the number of high-quality reads obtained after quality control and splicing. AvgLen (nt) is the average sequence length of all samples. Effective (%) is the percentage of effective reads in raw reads.