Fig 2. CYP2D6 allele frequencies for three MVP HARE groups, MVP Local Ancestry Inference (LAI) and two publicly available data sets: 1000 genome project and gnomAD.

Only consensus Tier 1 alleles [9] are shown. We note that we did not perform LAI in HARE EUR samples. Thus LAI frequencies are identical by default to HARE EUR frequencies. For HARE HIS, LAI corresponds to the AMR track allele frequencies (3-way deconvolution). We estimate imputation quality per site and ethnicity. We do not present allele frequencies for poorly imputed sites.