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. 2023 Jan 20;14(2):269. doi: 10.3390/genes14020269
GRN Gene Regulatory Network
TF Transcription Factor
TG Target Gene
RPM Reads per Million
RPK Reads per Kilobase
RPKM Reads per Kilobase Million
TPM Transcripts Per Kilobase
EFD Equal Frequency Discretization
EWD Equal Width Discretization
KMr K-Means Row Discretization
KMc K-Means Column Discretization
BKM Bidirectional K-Means
Zc Column-Wise Z-Score Standardization
Zr Row-Wise Z-Score Standardization
P Z-Score Polishing Standardization
I Identity
MI Mutual Information
SVMs Support Vector Machines
AB AdaBoost
GB Gradient Boosting
RF Random Forest
XRT eXtreme Randomized Trees
c Classifier
r Regressor
BRSr Bayesian Ridge Regressor
CNBc Complement Naive Bayes Classifier
PR Pearson Correlation Coefficient
SR Spearman Correlation Coefficient
KT Kendall Tau Statistic
CLR Context Likelihood of Relatedness
TIGRESS Trustful Inference of Gene Regulation using Stability Selection
SRL Stability Randomized Lasso
AUROC Area Under the Receiver Operating Characteristic Curve
AUPR Area Under the Precision Recall Curve