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. 2023 Jan 17;15(2):264. doi: 10.3390/v15020264

Figure 2.

Figure 2

Comparative pairwise homologies of the complete genome sequences and each of the CDS in the six viral genes between the Kenyan AvCoVs A374/17 (panel A) and A376/17 (panel B) and other strains in genotype I (GI; n = 25 strains from 7 lineages) and TCoVs (n = 11 strains), respectively. Correlations of the complete genome and respective gene sequences between the strains with reference to the Kenyan isolates are illustrated by the clustering tree on the left side. Colors change from blue to blood orange with increasing nucleotide similarities; gray boxes indicate that the genes in respective strains are not available in public genomic databases. Abbreviations: ExoN—N-terminal exoribonuclease; holo-RdRp—RNA-dependent RNA polymerase holoenzyme; NendoU—nidoviral RNA uridylate-specific endoribonuclease; nsp—non-structural protein; PL pro—papain-like protease; RBP—RNA-binding protein; 3CLpro—3C-like protease; TMD—transmembrane domain protein; MTase—(nucleoside-2′-O-)-methyltransferase; ZF-MFP—zinc-finger multifunctional protein.