DEG	Differentially expressed gene
IR	Inverted repeats
LSC	Large single copy
SSC	Small single copy
ISSR	Simple inter-sequence repeat
AFLR	Amplified fragment length polymorphism
SRAP	Sequence-related amplified polymorphism
SSRS	Simple sequence repeats
SNP	Single nucleotide polymorphism
INDEL	Insertion/deletion
LG	Linkage groups
SLAF-SEQ	Specific length amplified fragment sequencing
RAD-SEQ	Restriction-site associated DNA sequencing
GBS	Genotyping by sequencing
WGS	Whole-genome resequencing
WGBS	Whole genome bisulfite methylation sequencing
OXBS-SEQ	Oxidative bisulfite sequencing
RPBS	Reduced representation bisulfite sequencing
MEDIP-SEQ	Methylation DNA immunoprecipitation sequencing
HELP-SEQ	HpaⅡtiny fragement enrichment by ligation-mediated PCR
HPI	Hour post inoculation
DPA	Days post-anthesis
DAP	Differential abundant proteins