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. 2023 Feb 6;15(2):447. doi: 10.3390/v15020447

Table 2.

Structures of SARS-CoV-2 Omicron subvariant spikes. All the higher resolution structures of the free ectodomain trimer and its ACE-2 complexes that are available in the PDB are listed, as are the RBD orientations, spike conformational state (Figure 1), average MODA score of the 3 RBD modules, dipole moment (Debyes) of the S ectodomain (unless “n.a.” which indicates insufficient data), numbers of bound ACE-2 molecules, resolution (Å), PDB code, and reference.

Variant RBDs State MODA Dipole Ligand Resolution PDB Reference
BA.1 3 down 1.0 n.a. 9758 - 2.56 7wp9 [13]
BA.1 down 1.0 n.a. 7853 - 2.79 7t9j [14]
BA.1 3 down 1.0 4836 10765 - 3.10 7wk2 [15]
BA.1 3 down 1.0 3520 11247 - 3.10 7tnw [16]
BA.1 3 down 1.0 8660 9548 - 3.36 7tf8 [17]
BA.1 3 down 1.0 8676 9460 - 3.50 7tl1 [17]
BA.1 3 down 1.0 9198 11881 - 4.00 7wg7 [18]
BA.1 1 up 1.1 9510 11663 - 3.00 7y9s [19]
BA.1 1 up 1.1 9244 11403 - 3.00 7tgw [20]
BA.1 1 up 1.1 5382 12246 - 3.02 7qo7 [21]
BA.1 1 up 1.1 11654 6923 - 3.11 7thk [22]
BA.1 1 up 1.1 9475 10391 - 3.29 7tb4 [23]
BA.1 1 up 1.1 5329 11097 - 3.40 7wk3 n.a.
BA.1 1 up 1.1 9587 12937 - 3.40 7wg6 [18]
BA.1 1 up 1.1 6242 11702 - 3.40 7to4 [16]
BA.1 1 up 1.1 n.a. n.a. - 3.40 7tei [17]
BA.1 1 up 1.1 6237 11215 - 3.40 7wvn [15]
BA.1 1 up 1.1 3911 9486 - 3.41 7wvo [15]
BA.1 1 up 1.1 9654 10175 - 3.50 7tl9 [17]
BA.1 1 up 3.1 1885 4158 1 ACE-2 2.77 7wpa [13]
BA.1 1 up 3.1 4368 4393 1 ACE-2 2.85 7y9z [19]
BA.1 1 up 3.1 2440 2511 1 ACE-2 2.90 7ws9 [24]
BA.1 1 up 3.1 3085 3906 1 ACE-2 3.13 7xo5 [25]
BA.1 1 up 3.1 3423 4672 1 ACE-2 3.69 7wk4 [15]
BA.1 2 up 3.2 5248 5256 1 ACE-2 3.66 7wk5 [15]
BA.1 2 up 3.2 5261 5243 1 ACE-2 3.70 7wvp [15]
BA.1 3 up 3.3 7420 5770 1 ACE-2 4.04 7wvq [15]
BA.1 2 up 4.2 542 n.a. 2 ACE-2 2.45 7t9k [14]
BA.1 2 up 4.2 1070 7679 2 ACE-2 3.00 7ws8 [24]
BA.1 2 up 4.2 953 4278 2 ACE-2 3.24 7xo4 [25]
BA.1 2 up 4.2 2523 9770 2 ACE-2 3.30 7xid [25]
BA.1 2 up 4.2 2448 8324 2 ACE-2 3.40 7xch [19]
BA.1 2 up 4.2 1663 8544 2 ACE-2 3.50 7wgb [18]
BA.1 3 up 5.0 112 12925 3 ACE-2 3.10 7ya0 [19]
BA.2 3 down 1.0 7252 10081 - 3.25 7xix [7]
BA.2 3 down 1.0 6356 10173 - 3.31 7ub0 [26]
BA.2 3 down 1.0 5908 9760 - 3.35 7ub5 [26]
BA.2 3 down 1.0 6739 10146 - 3.52 7ub6 [26]
BA.2 1 up 1.1 7481 11259 - 3.62 7xiw [7]
BA.2 1 up 3.1 2537 3265 1 ACE-2 3.20 7xoa [25]
BA.2 2 up 4.2 511 4683 2 ACE-2 3.30 7xob [25]
BA.2 2 up 4.2 1011 7916 2 ACE-2 3.38 7xo7 [25]
BA.2 3 up 5.0 619 12139 3 ACE-2 3.48 7xo8 [25]
BA.2.12.1 3 down 1.0 7811 10381 - 3.48 7xns [7]
BA.2.13 3 down 1.0 5230 10781 - 3.49 7xnr [7]
BA.2.75 3 down 1.0 8214 8158 - 2.86 8gs6 [27]
BA.2.75 3 down 1.0 6241 9500 - 3.19 7yqu [28]
BA.2.75 3 down 1.0 6732 9285 - 3.51 7yqw [28]
BA.2.75 1 up 1.1 6246 9661 - 3.45 7yqt [28]
BA.2.75 1 up 1.1 6202 9646 - 3.58 7yqv [28]
BA.2.75 1 up 3.1 3649 6056 1 ACE-2 3.30 7yr2 [28]
BA.2.75 2 up 4.2 2693 10929 2 ACE-2 3.52 7yr3 [28]
BA.3 3 down 1.0 7674 10912 - 3.07 7xiy [7]
BA.4/5 3 down 1.0 6715 10753 - 3.52 7xnq [7]