Figure 5.

Phylogenetic analysis of SsAFV1 and representative members of the family Alphaflexiviridae based on the alignment of replicase (a) and CP (b). These ML trees were constructed as described with calculated best-fit model LG + I + G4 for replicase and LG + G4 for CP. The parameter of bootstrap was set as 1000 replicates and bootstrap values over 50% were indicated on branches. The virus studied in this paper was tagged with a red dot; the scale bar at the top left corresponds to the genetic distance. Details of these alphaflexiviruses are given in Table S1.