Table A.2.
Proportion of animals positive (as median and inter‐quartile range (IQR)) to SARS CoV‐2 infection in the field, per species and epidemiological unit following passive or active monitoring and according to virus detection/isolation or serological tests. Based on literature screening, only species found positive are included in the table, and studies including only one animal of this species are excluded from the calculations of proportions of positives
| Passive monitoring (suspicion‐based) | Active monitoring (random sampling) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Species | No. of references | Total no. of animal | % positive tested animals in each reference (virus isolation or PCR‐positive) (median; min–max) | % serologically positive animals in each reference (Median; min–max) | No. of references | Total no. of animal | % positive tested animals in each reference (virus isolation or PCR‐positive) (median; 25th–75th) | % serologically positive animals in each reference (Median; min–max | ||
| Companion animals/farmed animals | Cat | Felis catus | 51 | 725 | 100%; 0–100%) | (33.33%; 0–100%) | 27 | 12,531 | (0%; 0–2,48%) | (1.79%; 0–22.4%) |
| Cattle | Bos taurus | 1 | 16 | (0%) | 2 | 1,144 | (1.1%; 0–36.36%) | |||
| White‐tailed deer (farmed) | Odocoileus virginianus | 2 | 36 | (0%) | (95.24%; 90.47–100%) | |||||
| Dog | Canis familiaris | 34 | 823 | (1.95%; 0–100%) | (19.16%; 0–100%) | 24 | 10,971 | 7/3542 (0%; 0–1.32%) | (1.47%; 0–33.33%) | |
| Ferret | Mustela furo | 2 | 30 | (50.0%; 0–100%) | (87.93%; 80.0–100%) | 2 | 198 | (7.04%) | (1.57%) | |
| American mink | Neogale vison | 8 | 22,611 | (61.26%; 0.26–100%) | (78.34%; 2–100%) | 4 | 1,121 | (16.48%; 0.68–33.44%) | 98.7%; 7.7%–100.0%) | |
| Syrian Hamster | Mesocricetus auratus | 1 | 97 | 16.55% | 12.4% | |||||
| Rabbit | Oryctolagus cuniculus | 2 | 9 | (0%) | 2 | 173 | (0.69%; 0–1.38%) | |||
| zoo animals | Lion | Panthera leo | 7 | 30 | (100%; 1166.6–100%) | (100%; 11%–100%) | ||||
| Tiger | Panthera tigris | 7 | 22 | (100%; 62.5–100%) | (100%; 100%–100%) | |||||
| Gorilla | Gorilla gorilla | 2 | 16 | (50.0%; 37.5–62.5%) | ||||||
| Amur Leopard cat | Prionailurus bengalensis | 1 | 2 | 50% | ||||||
| Puma | Puma concolor | 1 | 1 | 100% | ||||||
| wild animals | Badger | Meles meles | 1 | 10 | (20%) | |||||
| Bat | Rhinolophus acuminatus | 1 | 208 | (13%) | (0.46%) | |||||
| White‐tailed deer | Odocoileus virginianus | 6 | 1,464 | 62 (24%; 0%–100% | (24%; 0%–100%) | |||||
| Jackal | Canis aureus | 2 | 66 | (0%) | (2.3%; 0–4.6%) | |||||
| Leopard | Panthera pardus | 1 | 1 | (100%) | ||||||
| Marten | Martes spp. | 1 | 14 | (21.42%) | ||||||
| American mink | Neogale vison | 3 | 108 | (0%; 0–25.0%) | (0%) | |||||
| Pangolin | Manis javanica | 1 | 10 | (10%) | ||||||
| Wild boar | Sus scrofa | 2 | 247 | (0%) | (1.95%; 0%–3.9%) | |||||
| Stray animals | cat | Felis catus | 4 | 332 | (64,29%) | (0.95%; 0–3.51%) | ||||
| dog | Canis familiaris | 1 | 8 | (62.5%) | ||||||