TABLE 5.
Genomic meta-data of 49 group B streptococcus (GBS) strains from Mayanei Hayeshua Medical Center (MHMC) [24 early-onset disease (EOD) and 25 colonizing strains.
Strain | Source | ST type | Genome size (bp) | Mean genome size (bp) | SD | No. of contigs | GC content (%) | CDS |
117690 | EOD | 17 | 1,952,166 | 2,001,326 | 33,038.75 | 47 | 35.32 | 2100 |
135217 | EOD | 17 | 1,954,426 | 39 | 35.18 | 1955 | ||
101298 | EOD | 17 | 1,956,116 | 41 | 35.16 | 1969 | ||
106704 | EOD | 17 | 1,958,977 | 42 | 35.16 | 1970 | ||
123494 | EOD | 17 | 1,959,814 | 46 | 35.42 | 2181 | ||
M38567 | COL | 17 | 1,976,171 | 41 | 35.2 | 1991 | ||
112109 | EOD | 17 | 1,992,470 | 43 | 35.32 | 2101 | ||
139904 | EOD | 17 | 1,992,893 | 43 | 35.16 | 1980 | ||
M40268 | COL | 17 | 1,998,253 | 41 | 35.34 | 1999 | ||
127946 | EOD | 17 | 1,998,291 | 42 | 35.34 | 2002 | ||
M40200 | COL | 17 | 1,998,371 | 41 | 35.34 | 2003 | ||
127743 | EOD | 17 | 1,998,934 | 43 | 35.33 | 2002 | ||
139934 | EOD | 17 | 1,999,036 | 41 | 35.3 | 2003 | ||
118022 | EOD | 17 | 2,001,983 | 42 | 35.08 | 2012 | ||
118659 | EOD | 17 | 2,011,569 | 38 | 35.32 | 2085 | ||
M40158 | COL | 17 | 2,014,292 | 43 | 35.3 | 2047 | ||
M39881 | COL | 17 | 2,015,862 | 38 | 35.39 | 2005 | ||
M38345 | COL | 17 | 2,015,870 | 45 | 35.2 | 2047 | ||
M40376 | COL | 17 | 2,016,361 | 38 | 35.36 | 2053 | ||
129618 | EOD | 17 | 2,022,841 | 44 | 35.32 | 2036 | ||
134924 | EOD | 17 | 2,027,570 | 47 | 35.37 | 2003 | ||
M38603 | COL | 17 | 2,030,084 | 38 | 35.64 | 2176 | ||
121684 | EOD | 17 | 2,039,347 | 52 | 35.38 | 2192 | ||
M38291 | COL | 17 | 2,100,127 | 38 | 35.39 | 2007 | ||
125416 | EOD | 23 | 1,909,126 | 2,100,416 | 62,369.45 | 29 | 35.26 | 1896 |
112767 | EOD | 178 | 2,012,915 | 43 | 35.16 | 1979 | ||
W19655 | COL | 1 | 2,035,207 | 20 | 35.3 | 2038 | ||
M42204 | COL | 19 | 2,042,352 | 55 | 35.4 | 2034 | ||
M41387 | COL | 130 | 2,052,446 | 38 | 35.4 | 2070 | ||
M40064 | COL | 1 | 2,056,223 | 18 | 35.37 | 2055 | ||
M38421 | COL | 8 | 2,061,907 | 34 | 35.1 | 2088 | ||
M40042 | COL | 1 | 2,083,880 | 19 | 35.2 | 2081 | ||
M38742 | COL | 1 | 2,092,052 | 10 | 35.35 | 2079 | ||
111236 | EOD | 18 | 2,092,413 | 43 | 35.32 | 2100 | ||
M40083 | COL | 19 | 2,094,244 | 53 | 35.5 | 2107 | ||
M38307 | COL | 1 | 2,096,218 | 19 | 35.37 | 2101 | ||
136117 | EOD | 196 | 2,110,014 | 30 | 35.39 | 2136 | ||
137471 | EOD | 4 | 2,127,936 | 30 | 35.3 | 2171 | ||
96655 | EOD | 1 | 2,128,796 | 15 | 35.34 | 2112 | ||
M41827 | COL | 1 | 2,129,556 | 17 | 35.3 | 2120 | ||
M39135 | COL | 12 | 2,129,642 | 40 | 35.3 | 2168 | ||
M40942 | COL | 1 | 2,130,091 | 17 | 352 | 2118 | ||
M39081 | COL | 1 | 2,130,695 | 17 | 35.3 | 2123 | ||
M38914 | COL | 1 | 2,131,011 | 17 | 35.3 | 2123 | ||
107488 | EOD | 1 | 2,134,184 | 14 | 35.33 | 2124 | ||
M38346 | COL | 19 | 2,154,193 | 53 | 35.45 | 2183 | ||
119317 | EOD | 27 | 2,182,713 | 90 | 35.45 | 2248 | ||
M42210 | COL | 27 | 2,194,420 | 72 | 35.4 | 2255 | ||
104854 | COL | 106 | 2,198,156 | 79 | 35.56 | 2273 |
Genomic meta-data of 49 GBS isolates from MHMC (24 EOD and 25 colonizing isolates). The data for each isolate was organized and sorted by genome size (from largest to smaller) and includes ST type, number of contigs, guanine-cytosine content (GC) and coding sequence (CDS). colonizing isolates (COL).