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. 2023 Jan 17;8:24. [Version 1] doi: 10.12688/wellcomeopenres.18658.1

Table 2. Counts of directly recorded and estimated values at the species level for each taxon attribute in GoaT.

Display group Attributes Count
of direct
values *
Count of
estimated
values
assembly assembly_level; assembly_span; bioproject; biosample; contig_n50; assembly_date;
scaffold_n50; gene_count; ebp_metric_date; btk_nohit; btk_target;
busco_completeness; busco_lineage; busco_string; gc_percent;
n_percent; odb10_lineage
122,242 3,150,416
genome_size c_value; c_value_method; c_value_cell_type; genome_size; genome_size_kmer;
genome_size_draft
53,880 3,135,351
karyotype chromosome_number; haploid_number; sex_determination; ploidy 94,403 4,659,266
mitochondrion_assembly mitochondrion_assembly_span; mitochondrion_gc_percent 28,194 3,119,060
plastid_assembly plastid_assembly_span; plastid_gc_percent 20,460 488,218
regional_lists country_list 689 0
sample sample_sex; sample_location 2,949 0
sequencing_status sample_collected; sample_collected_by; sample_acquired; in_progress;
insdc_open; published; sequencing_status; sequencing_status_ag100pest;
sequencing_status_asg; sequencing_status_b10k; sequencing_status_canbp;
sequencing_status_cbp; sequencing_status_ccgp; sequencing_status_cfgp;
sequencing_status_dtol; sequencing_status_ebpn; sequencing_status_
endemixit; sequencing_status_erga; sequencing_status_eurofish; sequencing_
status_gaga; sequencing_status_giga; sequencing_status_ilebp; sequencing_
status_metainvert; sequencing_status_pgp; sequencing_status_squalomix;
sequencing_status_vgp; sequencing_status_zoonomia; sequencing_status_
omg; sequencing_status_arg; sequencing_status_agi; sequencing_status_tsi;
sequencing_status_gap; sequencing_status_gbr; sequencing_status_ebp
75,790 10,066
target_lists long_list; other_priority; family_representative 87607 0
uk_legislation echabs92; habreg_2017; marhabreg-2017; waca_1981; isb_wildlife_act_1976;
protection_of_badgers_act_1992
1733 0

*The count of directly recorded values includes species for which the value is associated with a descendant subspecies.