TABLE 4.
The example of entities retrieved from different repositories, the PMR and the BioModels database. Those entities have similarities in the ontology classes related to the queries.
| Query | Result | |
|---|---|---|
| PMR | BioModels database | |
| concentration of triose phosphate in astrocyte | cloutier_2009.cellml#GAPg_GAPg | BIOMD0000000565.rdf#metaid_40 |
| FMA:54537 Astrocyte | OPB:00592 Chemical molar flow rate | |
| OPB:00340 Concentration of chemical | CHEBI:32816 pyruvic acid | |
| CHEBI:17138 glyceraldehyde 3-phosphate | CHEBI:17138 glyceraldehyde 3-phosphate | |
| GO:0005829 cytosol | ||
| ammonium in cytoplasm | weinstein_1995.cellml#Concentrations.C_int_NH4 | BIOMD0000000470.rdf#metaid_1155 |
| OPB:00340 Concentration of chemical | OPB:00592 Chemical molar flow rate | |
| CHEBI:28938 ammonium | CHEBI:28938 ammonium | |
| FMA:66836 Portion of cytosol | GO:0005576 extracellular region | |
| GO:0005737 cytoplasm | ||
The text in bold are the variable names obtained from the PMR and the BioModel database using the two queries given.