Table 2.
ICC Scores
| Poor (ICC <0.5) | Moderate (ICC, 0.5–0.74) | Good (ICC, 0.75–0.89) | Excellent (0.9≥ ICC) | |
|---|---|---|---|---|
| QC GV | 0 | 0 | 0 | 59 |
| Annotated GV | 10462 | 4141 | 1539 | 576 |
| Predicted GV | 18583 | 25029 | 22199 | 24873 |
| Methylation | 488531 | 168790 | 54376 | 15766 |
Note: An overview of the ICC values classified using the system presented by Koo and Li.47 QC GV = Quality control probes that bind genetic variant only. Annotated GV = Methylation probes that are annotated to bind genetic variants at the CpG of interest. Predicted GV = Methylation probes that are annotated to bind genetic variants that were annotated by Gaphunter to be caused by genetic variants. Methylation = Methylation probes for which we have no evidence that they bind genetic variants.
GV, Genetic variants; ICC, interclass correlation.