TABLE 2.

Acquired antimicrobial resistance genes identified within chicken production and human clinical isolate FASTA assemblies using ResFinder^a

Gene	Drug class	Gene	Drug class
aac(3)-IIa	Aminoglycoside antibiotic	dfrA1	Diaminopyrimidine antibiotic
aac(3)-IId	Aminoglycoside antibiotic	dfrA12	Diaminopyrimidine antibiotic
aac(3)-IV	Aminoglycoside antibiotic	dfrA14	Diaminopyrimidine antibiotic
aac(6′)-Ib-cr	Fluoroquinolone antibiotic, Aminoglycoside antibiotic	dfrA17	Diaminopyrimidine antibiotic
aadA1	Aminoglycoside antibiotic	erm(B)	Lincosamide antibiotic, macrolide antibiotic, streptogramin antibiotic
aadA2	Aminoglycoside antibiotic	floR	Phenicol antibiotic
aadA5	Aminoglycoside antibiotic	formA	Disinfecting agents
aph(3″)-Ib	Aminoglycoside antibiotic	fosA7	Fosfomycin
aph(3′)-Ia	Aminoglycoside antibiotic	mcr-9	Peptide antibiotic
aph(3′)-IIa	Aminoglycoside antibiotic	mdf(A)	Rhodamine, tetracycline antibiotic, benzalkonium chloride
aph(3′)-III	Aminoglycoside antibiotic	mph(A)	Macrolide antibiotic
aph(4)-Ia	Aminoglycoside antibiotic	qacE	Disinfecting agents and intercalating dyes
aph(6)-Ic	Aminoglycoside antibiotic	qnrB19	Fluoroquinolone antibiotic
aph(6)-Id	Aminoglycoside antibiotic	rmtB	Aminoglycoside antibiotic
bla CMY-2	Penam, carbapenem, cephalosporin, cephamycin	sitABCD	Disinfecting agents
bla CTX-M-14	Cephalosporin	sul1	Sulfonamide antibiotic
bla CTX-M-15	Penam, cephalosporin	sul2	Sulfonamide antibiotic
bla OXA-1	Penam, carbapenem, cephalosporin	sul3	Sulfonamide antibiotic
bla OXA-244	Penam, carbapenem, cephalosporin	tet(A)	Tetracycline antibiotic
bla TEM-1B	Monobactam, penam, penem, cephalosporin	tet(B)	Tetracycline antibiotic
catA1	Phenicol antibiotic	tet(C)	Tetracycline antibiotic

^aResFinder output hits for each gene were filtered (≥80% identity to database reference query). The corresponding resistance-conferring drug class for each gene was identified using the Comprehensive Antibiotic Resistance Database (CARD).