TABLE 2.
Human virus primer sets and probe sequences
| Virus | Primer and probe sequences | Amplicon and target |
|---|---|---|
| Panenterovirus | Upstream, 5′-CCTCCGGCCCTGAATG-3′ | 197-bp highly conserved 5′ untranslated region |
| Downstream, 5′-ACCGGATGGCCAATC-3′ | ||
| Probe, 5′-TACTTTGGGTGTCCGTGTTTC-3′ | ||
| Hepatitis A virus | Upstream, 5′-CAGCACATCAGAAAGGTGAG-3′ | 192-bp VP1 and VP2 capsid protein interphase |
| Downstream, 5′-CTCCAGAATCATCTCCAAC-3′ | ||
| Probe, 5′-TGCTCCTCTTTATCATGCTATG-3′ | ||
| Norwalk | Upstream, 5′-CAAATTATGACAGAATCCTTC-3′ | 260-bp viral polymerase |
| Downstream, 5′-GAGAAATATGACATGGATTGC-3′ | ||
| Probe, 5′-ATGTCATCAGGGTCAAAGAGG-3′ | ||
| SRSV (Ando) | Upstream, 5′-TGTCACGATCTCATCATCACC-3′ | 123-bp RNA polymerase region |
| Downstream, 5′-TGGAATTCCATCGCCCACTGG-3′ | ||
| Probes, 5′-ATGTCAGGGGACAGGTTTGT-3′, 5′-ATGTCGGGGCCTAGTCCTGT-3′, 5′-ACATCGGGTGATAGGCCTGT-3′ |