TABLE 3.
The nine lncRNAs’ primer sequences and their potential in pan-cancer.
Gene symbol | Sequence (5′–3′) | Pan-cancer potential | Cancer types with significant differential expression, prognostic ability, and staging power | |||||
---|---|---|---|---|---|---|---|---|
Forward | Reverse | Significantly differentially expressed between tumor and normal, cancer type counts (total 34 types) | Significant prognostic ability, cancer type counts (total 44 types) | Significantly distributed in tumor stage subtypes, cancer type counts (total 30 types) | Sum counts | Cancer type counts | Cancer type names | |
AC009120.2 | CCCTGTTGGCAGAGGTGTAT | GGGTGCAGAGACCAGGAATA | 31 | 12 | 7 | 50 | 2 | COAD, LUAD |
AC093010.2 | GTGAGGTTCGAAGCAGGAAG | TTCCCAGTATGGCGTTTCTC | 19 | 10 | 3 | 32 | 2 | LUAD, KIPAN |
AC107464.3 | CCTGGGGATGCAGCATATT | GGCAAGAGAGACCAGCATTC | 30 | 17 | 8 | 55 | 7 | KIRP, LUAD, KICH, KIPAN, BRCA, STES, STAD |
COLCA1 | ATCTTCACCCCAAGCCTTCT | CTGAGGTCAATGGCAAGGAT | 30 | 10 | 8 | 48 | 5 | KIPAN, KIRP, KIRC, LUAD, KICH |
LINC00324 | AGAGCCCAGGAACTGTCAAA | GGGTTCTGTTCTTCCAACCA | 24 | 14 | 8 | 46 | 3 | LIHC, LUAD, KIRP |
LINC00862 | GCAGCGATTGGAGTGATGTA | CAGAAGTCCCAAGTCCCAAA | 25 | 14 | 4 | 43 | 1 | KICH |
LINC01711 | ACTCTCCGAGGGTCAAGGAT | GCCTTTGAGTAAGCCGTTTG | 30 | 16 | 12 | 58 | 6 | KIPAN, KIRC, KIRP, COADREAD, STAD, BLCA |
LINC01833 | ACCATCGGACTGACGTTCTC | CTAGAAGCGGTTCCTTGTGC | 31 | 9 | 3 | 43 | 1 | KICH |
PRKAG2-AS1 | GGGACTTCTGGGTCTTCTCC | CTTGAGCATTCAGTGGGACA | 31 | 9 | 8 | 48 | 2 | KIPAN, BRCA |