Table 1. Genome data for Patella pellucida, xgPatPell1.1.
| Project accession data | |
|---|---|
| Assembly identifier | xgPatPell1.1 |
| Species | Patella pellucida |
| Specimen | xgPatPell1 (genome assembly); xgPatPell2 (Hi-C); xgPatPell3 (RNA-Seq) |
| NCBI taxonomy ID | NCBI:txid88005 |
| BioProject | PRJEB45187 |
| BioSample ID | SAMEA7522851 |
| Isolate information | Whole organisms |
| Raw data accessions | |
| PacificBiosciences SEQUEL II | ERR6412040 |
| 10X Genomics Illumina | ERR6054924-ERR6054927 |
| Hi-C Illumina | ERR6054928 |
| PolyA RNA-Seq Illumina | ERR6054929 |
| Genome assembly | |
| Assembly accession | GCA_917208275.1 |
| Accession of alternate haplotype | GCA_917208175.1 |
| Span (Mb) | 712 |
| Number of contigs | 495 |
| Contig N50 length (Mb) | 3.2 |
| Number of scaffolds | 62 |
| Scaffold N50 length (Mb) | 87.2 |
| Longest scaffold (Mb) | 95.0 |
| BUSCO * genome score | C:87.6%[S:86.7%,D:0.8%],F:5.2%,M:7.3%,n:5295 |
*BUSCO scores based on the mollusca_odb10 BUSCO set using v5.1.2. C= complete [S= single copy, D=duplicated], F=fragmented, M=missing, n=number of orthologues in comparison. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/xgPatPell1.1/dataset/CAKJPN01/busco.