Table 1. Genome data for Haliclystus octoradiatus (jrHalOcto1.1).
| Project accession data | ||
|---|---|---|
| Assembly identifier | jrHalOcto1.1 | |
| Species | Haliclystus octoradiatus | |
| Specimen | jrHalOcto1 | |
| NCBI taxonomy ID | 313498 | |
| BioProject | PRJEB45172 | |
| BioSample ID | SAMEA7522858 | |
| Isolate information | mid-body tissue | |
| Assembly metrics * | Benchmark | |
| Consensus quality (QV) | 56.6 | ≥ 50 |
| k-mer completeness | 99.99% | ≥ 95% |
| BUSCO ** | C:81.3%[S:81.1%,D:0.2%], F:9.4%,M:9.2%,n:954 | C ≥ 95% |
| Percentage of assembly
mapped to chromosomes |
98.3% | ≥ 95% |
| Sex chromosomes | Not applicable | localised homologous pairs |
| Organelles | mitochondrial genome 18.3 kb | complete single alleles |
| Raw data accessions | ||
| PacificBiosciences SEQUEL II | ERR6897437, ERR6897438 | |
| 10X Genomics Illumina | ERR6745734– ERR6745737 | |
| Hi-C Illumina | ERR6745733 | |
| PolyA RNA-Seq Illumina | ERR9434978 | |
| Genome assembly | ||
| Assembly accession | GCA_916610825.1 | |
| Accession of alternate haplotype | GCA_916610655.1 | |
| Span (Mb) | 262 | |
| Number of contigs | 337 | |
| Contig N50 length (Mb) | 1.5 | |
| Number of scaffolds | 33 | |
| Scaffold N50 length (Mb) | 29 | |
| Longest scaffold (Mb) | 40 | |
* Assembly metric benchmarks are adapted from column VGP-2020 of “Table 1: Proposed standards and metrics for defining genome assembly quality” from ( Rhie et al., 2021).
** BUSCO scores based on the metazoa_odb10 BUSCO set using v5.1.2. C = complete [S = single copy, D = duplicated], F = fragmented, M = missing, n = number of orthologues in comparison. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/jrHalOcto1.1/dataset/CAKAJK01/busco.