Table 1. Genome data for Trachurus trachurus, fTraTra1.2.
| Project accession data | |
|---|---|
| Assembly identifier | fTraTra1.2 |
| Species | Trachurus trachurus |
| Specimen | BMNH 2021.3.19.1; fTraTra1 |
| NCBI taxonomy ID | NCBI:txid36212 |
| BioProject | PRJEB42240 |
| BioSample ID | SAMEA7524396 |
| Isolate information | Muscle |
| Raw data accessions | |
| PacificBiosciences SEQUEL II | ERR6445210 |
| 10X Genomics Illumina | ERX5643309, ERX5643310,
ERX5693250, ERX5693251 |
| Hi-C Illumina | ERR6054366-ERR6054368 |
| Genome assembly | |
| Assembly accession | GCA_905171665.2 |
| Accession of alternate haplotype | GCA_905171655.2 |
| Span (Mb) | 801 |
| Number of contigs | 374 |
| Contig N50 length (Mb) | 6.49 |
| Number of scaffolds | 152 |
| Scaffold N50 length (Mb) | 35.45 |
| Longest scaffold (Mb) | 40.75 |
| BUSCO * genome score | C:98.6%[S:97.8%,D:0.8%],
F:0.3%,M:1.1%,n:3640 |
| Genome annotation ** | |
| Number of protein-coding genes | 25,797 |
| Average length of protein-coding
gene (bp) |
1,811 |
| Average number of exons per
gene |
12 |
| Average exon size (bp) | 178 |
| Average intron size (bp) | 1,755 |
*BUSCO scores based on the actinopterygii_odb10 BUSCO set using v5.1.2. C= complete [S= single copy, D=duplicated], F=fragmented, M=missing, n=number of orthologues in comparison. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/fTraTra1.2/dataset/CAJIMH02/busco.
**Genome annotation provided for assembly fTraTra1.1.