Table 3. Software tools used.
| Software tool | Version | Source |
|---|---|---|
| Falcon_unzip | 1.4.2 | Chin et al., 2016 |
| purge_dups | 1.0.1 | Guan et al., 2020 |
| scaff10x | 4.1 | https://github.com/wtsi-hpag/Scaff10X |
| SALSA2 | 2.2 | Ghurye et al., 2019 |
| arrow | GCpp-1.9.0 | https://github.com/PacificBiosciences/GenomicConsensus |
| freebayes | 1.3.1-17-gaa2ace8 | Garrison & Marth, 2012 |
| mitoVGP | 2.2 | Formenti et al., 2021 |
| gEVAL | N/A | Chow et al., 2016 |
| HiGlass | 1.11.6 | Kerpedjiev et al., 2018 |
| PretextView | 0.1.x | https://github.com/wtsi-hpag/PretextView |
| BlobToolKit | 2.6.4 | Challis et al., 2020 |