Table 2.
Genes in cp genome of A. transsectum
| Category | Gene group | Gene name |
|---|---|---|
| Photosynthesis | Subunits of photosystem I | psaA, psaB, psaC, psaI, psaJ |
| Subunits of photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
| Subunits of NADH dehydrogenase | ndhA*, ndhB*(2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | |
| Subunits of cytochrome b/f complex | petA, petB*, petD*, petG, petL, petN | |
| Subunits of ATP synthase | atpA, atpB, atpE, atpF*, atpH, atpI | |
| Large subunit of rubisco | rbcL | |
| Subunits photochlorophyllide reductase | - | |
| Self-replication | Proteins of large ribosomal subunit | rpl14, rpl16*, rpl2*(2), rpl20, rpl22, rpl23(2), rpl33, rpl36 |
| Proteins of small ribosomal subunit | rps11, rps12**(2), rps14, rps15, rps18, rps19, rps2, rps3, rps4, rps7(2), rps8 | |
| Subunits of RNA polymerase | rpoA, rpoB, rpoC1*, rpoC2 | |
| Ribosomal RNAs | rrn16(2), rrn23(2), rrn4.5(2), rrn5(2) | |
| Transfer RNAs | trnA-UGC*(2), trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-GCC*, trnG-UCC, trnH-GUG, trnI-CAU(2), trnI-GAU*(2), trnK-UUU*, trnL-CAA(2), trnL-UAA*, trnL-UAG, trnM-CAU, trnN-GUU(2), trnP-UGG, trnQ-UUG, trnR-ACG(2), trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC(2), trnV-UAC*, trnW-CCA, trnY-GUA, trnfM-CAU | |
| Other genes | Maturase | matK |
| Protease | clpP** | |
| Envelope membrane protein | cemA | |
| Acetyl-CoA carboxylase | accD | |
| c-type cytochrome synthesis gene | ccsA | |
| Translation initiation factor | infA | |
| other | - | |
| Genes of unknown function | Conserved hypothetical chloroplast ORF | ycf1(2), ycf15(2), ycf2(2), ycf3**, ycf4 |
Gene*: Gene with one intron; Gene**: Gene with two introns; Gene (2): Genes duplicated in the IR regions