Table 2.

Hi-C constraints applied for single chromosome model reconstruction from mean/median and 35^th percentile IF threshold cutoff in amphioxus

Chromosomal scaffold	Mean IF	Median IF	35th percentile	mean IF %	median IF %	35th IF %
Sc7u5tJ_339	4.71	2	1.5	86	50.01	35
Sc7u5tJ_1590	4.58	1.98	1.47	85.76	50.01	35.01
Sc7u5tJ_366	4.79	1.99	1.48	86.56	50.01	35
Sc7u5tJ_1568	61.89	42.35	7.5	57.81	50	35.94
Sc7u5tJ_1587	5.94	2.37	1.83	86.58	50	34.99
Sc7u5tJ_1571	4.02	1.67	1.25	86.4	50	35
Sc7u5tJ_1559	3.83	1.58	1.17	85.79	50	35
Sc7u5tJ_320	6	2.26	1.71	88.29	50.01	35.01
Sc7u5tJ_1517	5.45	2.27	1.69	85.77	50	35
Sc7u5tJ_350	3.63	1.62	1.21	85.06	50	35
Sc7u5tJ_1565	7.11	2.5	1.89	89.12	50.01	35.01
Sc7u5tJ_566	5.46	2.12	1.58	87.64	50	35
Sc7u5tJ_1552	5	2.16	1.63	85.84	50	35.01
Sc7u5tJ_1442	3.48	1.55	1.16	84.24	50	35
Sc7u5tJ_1579	5.05	2.25	1.72	85.58	50	35
Sc7u5tJ_190	4.99	2.05	1.55	86.93	50	35
Sc7u5tJ_1485	5.75	2.45	1.87	86.56	50.01	35
Sc7u5tJ_1398	4.5	1.71	1.29	87.71	50	35
Sc7u5tJ_417	5.33	2.2	1.67	86.18	50	35