Fig. 4.
Core genome MLST-based phylogeny of PMQR Escherichia coli isolates (n = 70) from humans, chickens, and poultry environments. cgMLST-based phylogenetic tree of PMQR E. coli isolates visualized in Interactive Tree Of Life tool (iTOL). The clustering of isolates was found to be following the core genome. The clustering of isolates belonging to the same phylogroup and sequence type was consistent. Shown for each isolate from left to right are the source, resistance phenotype, phylogroup, point mutations, AMR genes, and plasmid replicons