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. 2023 Feb 27;12:e82037. doi: 10.7554/eLife.82037

Table 2. Putative targeting of the differentially expressed genes by the eight validated miRNAs (in Figure 1h).

This table lists the 174 differentially expressed genes putatively targeted by one or more discriminant miRNAs according to the in silico prediction analysis using four algorithms (TargetScan, Miranda, RNA22, and miRWalk). Crosses indicate a putative target predicted by three or four algorithms (score 3–4). i-OCLs: inflammatory osteoclasts; t-OCLs: tolerogenic osteoclasts.

Gene symbol -log(p-value) Fold change (log2) i-OCLs miRNAs (score 3–4) t-OCLs miRNAs (score 3–4)
Mir155 Mir146b Mir342 Mir151 Mir185 Mir674 Mir26b Mir29a
1810011H11Rik 2,78 –3,4 X X X
5430427O19Rik 2,56 –4,0 X X
9930111J21Rik1 3,31 –3,5 X
A530064D06Rik 3,67 –4,2 X
Abcc3 2,41 –3,0 X
Acpp 2,81 –2,4 X X X
Acvrl1 2,48 –2,8 X X X
Adap2 3,93 –3,2 X
Ahrr 2,37 –2,7 X X X
Akt3 3,24 –2,5 X X X X X X
Alox5 2,86 –2,5 X
Als2cl 3,45 –4,5 X X X X X
Aoah 4,41 –4,6 X
Apobec1 3,21 –2,9 X X
Arhgap15 3,01 –3,7 X X X
Arhgap19 2,35 –2,6 X X
Arhgef10l 2,80 –2,8 X
Arl4c 3,00 –2,6 X X
Atf3 2,61 –3,6 X
Atp1a3 3,36 –2,6 X X
B430306N03Rik 3,14 –3,4 X X X X X
B4galt6 2,90 –3,4 X X X X X X
Bhlhe41 3,45 –3,8 X X X X X X
Bst1 2,49 –3,5 X
Btg2 2,67 –3,5 X X X X
C3ar1 2,90 –3,0 X X X
C5ar1 3,30 –3,9 X X
Camk1d 2,47 –3,1 X X X X X X X
Ccl6 5,25 –5,6 X
Cd28 2,56 –1,9 X X X
Cd300lb 3,16 –3,6 X X
Cd300ld 4,11 –4,8 X X
Cd36 4,26 –4,0 X X
Cd5l 3,43 3,4 X
Cd93 3,69 –4,0 X X X X X X X
Cdc42ep3 3,01 –3,1 X
Cebpa 2,99 –2,7 X
Chst12 2,72 –2,6 X
Clec4a1 3,89 –2,7 X
Clec4n 3,02 –3,8 X
Cmpk2 3,05 –2,8 X
Cnr2 2,91 –3,9 X X
Cybb 4,24 –4,0 X
Dab2 3,30 –4,0 X X X X
Dapk1 2,44 –1,8 X X
Ddx58 3,39 –3,1 X
Dhrs3 3,35 –3,2 X
Dock1 2,35 –1,8 X X
Dock2 2,65 –2,7 X
Dram1 2,98 –2,6 X X X X X X
Dtx3l 3,00 –2,4 X X
Ednrb 3,79 –3,7 X X X
Elmsan1 2,86 –2,4 X X X
Entpd1 2,84 –2,5 X X
Eps8 3,85 –4,9 X
Fabp5 3,23 –2,3 X
Fads1 4,20 –3,3 X
Fcgr4 3,58 –3,2 X
Frmd4b 2,92 –2,2 X
Gas7 2,43 –2,5 X X X X
Gbp2 3,70 –3,3 X
Gcnt1 2,37 –2,8 X
Ggta1 3,34 –3,1 X X
Gna15 2,86 –3,1 X
Gng2 2,98 –3,4 X
Gpr162 4,13 –4,3 X
H2-M3 2,70 –3,2 X
Hfe 5,45 –3,5 X
Hip1 2,71 –2,5 X X X
Hvcn1 3,48 –3,4 X
Id3 3,61 –3,4 X
Ifi203 2,64 –3,0 X X X X
Ifi204 3,08 –2,3
Ifih1 4,04 –2,6 X
Ifit3 2,82 –2,9 X X
Ifngr1 2,38 –2,1 X
Igf1 3,78 –4,5 X X X X X X X
Igfbp4 3,21 –4,8 X X
Ikbke 3,62 –3,9 X X X
Ikzf1 3,18 –3,0 X X X
Il7r 3,05 –3,8 X
Irf9 2,46 –2,4 X
Itgal 2,94 –3,9 X X
Kctd12 2,63 –2,3 X X
Kif3a 2,71 –1,9 X X X
Klf2 2,62 –2,7 X
Lamp2 2,45 –2,4 X
Ldlrad3 2,71 –3,8 X X X
Limd2 3,05 –2,9 X X
Lipa 2,53 –2,4 X X
Lpar6 3,10 –2,7 X
Lpcat2 2,57 –3,7 X
Ltbp2 2,53 –3,3 X X
Ly6e 3,96 –3,0 X
Ly9 2,34 –1,9 X
Lyl1 3,48 –3,9 X
Lyz2 3,62 –4,0 X X
Maf 3,59 –4,0 X
Mafb 2,41 –3,4 X
Man2a2 3,96 –2,9 X
Map3k1 2,42 –2,0 X
Marcks 2,80 –2,2 X X X
Mef2c 2,75 –2,5 X X X
Mertk 2,70 –2,7 X
Mgll 2,44 –2,3 X
Mmp12 4,16 –4,8 X X
Mpeg1 3,07 –3,4 X X
Ms4a6b 7,62 –4,1 X
N4bp2l1 3,02 –2,4 X X
Ncapg2 3,05 –2,5 X X X X X
Ncf1 4,43 –4,6 X X
Nek6 2,46 –4,3 X
Neurl3 4,51 –3,3 X
Nlrp3 3,29 –4,2 X
Nrp1 2,36 –2,5 X
Oas1a 2,52 –2,3 X
Osm 3,07 –3,2 X
P2rx7 3,53 –3,1 X X
Pacs1 4,16 –2,6 X
Parp14 2,93 –2,4 X X X
Peli2 4,98 –2,9 X X
Pgap1 3,22 –2,5 X X X X X X
Pim1 2,93 –2,7 X
Pld4 5,19 –4,5 X
Plxnc1 4,24 –4,1 X
Pmp22 2,98 –3,0 X
Ppbp 2,90 5,4 X
Ptgir 3,30 –3,2 X
Ptgs1 3,71 –4,1 X
Rab3il1 3,19 –3,5 X
Rab8b 2,85 –3,0 X
Rcsd1 3,74 –3,7 X
Rnasel 2,62 –2,5 X X X
Rnf150 4,58 –2,8 X X X X X X
Rsad2 2,53 –3,0 X X X X
Rxra 2,59 –1,9 X X
S1pr1 3,26 –3,6 X X
Sash1 3,01 –2,6 X
Sash3 3,21 –3,2 X
Sdc3 2,38 –2,2 X X X X
Sepp1 3,53 –4,2 X
Sgpp1 2,38 –2,1 X X
Sidt2 2,64 –2,1 X X X
Six1 3,60 –5,0 X X X
Slamf7 4,94 –4,2 X
Slamf8 3,05 –2,2 X
Slc7a11 3,08 –3,2 X X X X X
Slc9a3r1 2,94 –2,6 X
Slfn5 4,24 –2,7 X
Slfn8 2,76 –3,5 X
Snx24 2,99 –3,2 X X X X
Snx30 2,79 –3,2 X X
Stat2 2,76 –1,8 X
Stom 2,60 –2,5 X X
Susd3 2,76 –3,1
Tanc2 2,65 –3,1 X X X X X X
Tifa 2,53 –2,5 X
Tle3 4,70 –3,7 X X X
Tlr13 4,27 –4,1 X
Tmem154 3,16 –5,6 X X X X
Tmem176a 4,09 –5,2 X
Tmem176b 4,13 –4,1 X
Tmem229b 2,75 –1,9 X X X
Tmem71 4,32 –4,7 X
Tnfaip8l2 2,54 –3,0 X
Tnfrsf26 3,50 –4,4 X X X
Trim30a 2,41 –1,9 X X
Trim30d 3,73 –4,1 X X
Ugcg 2,90 –2,4 X
Usp18 4,07 –3,0 X
Wls 2,43 –2,4 X
Ypel3 2,39 –1,6 X
Zcchc24 3,30 –3,2 X X X
Zfhx3 3,46 –2,4 X X X
Zfp36l1 2,36 –2,1 X X
Zfp608 2,38 –2,6 X X