Table 1.
Examined intercalation sequence-specificity of C-1311 (Symadex), C-283 (Ledakrin/Nitracrine) and C-1748. Results for C-1305 were taken from previous studies13.
| Oligonucleotide codename | Sequence 5′–3′ | Dinucleotide steps binding C-130513 | Dinucleotide steps binding C-1311 | Dinucleotide steps binding C-283 | Dinucleotide steps binding C-1748 |
|---|---|---|---|---|---|
| D1 | CCCGGG | CG/CG | CG/CG | – | – |
| D2 | CGATATCG | TA/TA | TA/TA | – | – |
| D3 | CCCTAGGG | TA/TA | TA/TA | – | – |
| D4 | GGGTACCC | TA/TA | TA/TA | – | – |
| D5 | CCCATGGG | TG/CA | – | – | – |
| D6 | GGGATCCC | – | – | – | – |
| D7 | GTACGTAC | TA/TA | TA/TA | – | – |
| D8 | CTAGCTAG | TA/TA | TA/TA | – | – |
| D9 | GAACGTTC | CG/CG | – | – | – |