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. Author manuscript; available in PMC: 2024 Feb 16.
Published in final edited form as: Cell. 2023 Feb 16;186(4):732–747.e16. doi: 10.1016/j.cell.2023.01.020

Key resources table

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Anti-MYSM1 antibody Abcam ab-221725
RPS24 Polyclonal antibody ProteinTech 14831-1-AP
RPS7 Polyclonal antibody ProteinTech 14491-1-AP
Ferroptosis Antibody Sampler Kit Cell signaling Technology 29650
Brilliant Violet 421 anti-human CD34 Antibody BD Biosciences 562577
PE Mouse Anti-Human CD66b BD biosciences 561650
PE Mouse Anti-Human CD33 BD biosciences 555450
PE Mouse Anti-Human CD19 BD biosciences 555413
RPL15 Polyclonal antibody Proteintech 16086-1-AP
RPL23 Polyclonal antibody Proteintech 10727-1-AP
Ferritin light chain Polyclonal antibody Proteintech 10727-1-AP
anti-CD90-PECy7 BD biosciences 561558
APC-H7 Mouse Anti-Human CD45RA BD biosciences 560674
Necroptosis Antibody Sampler Kit Cell signaling Technology 98110T
Apoptosis Antibody Sampler Kit Cell signaling Technology 9915T
hnRNP-E1 Polyclonal antibody proteintech 14523-1-AP
PCBP2 Polyclonal antibody proteintech 15070-1-AP
SLC40A1/FPN1 Polyclonal antibody proteintech 26601-1-AP
GCLM Polyclonal antibody proteintech 14241-1-AP
GCLC Polyclonal antibody proteintech 12601-1-AP
FITC Annexin V Biolegend 640906
APC anti-human CD49c (integrin α3) Antibody Biolegend 343808
ALAS1 Polyclonal antibody proteintech 16200-1-AP
HSP27 Polyclonal antibody proteintech 18284-1-AP
RELB Polyclonal antibody proteintech 25027-1-AP
Ferroportin/SLC40A1 Antibody - BSA Free Novus Biologicals NBP1-21502SS
BB700 Mouse Anti-Human CD133 BD biosciences 747638
rat anti-human anti-EPCR-PE Biolegend 351904
PE anti-human CD34 Antibody Biolegend 343506
PE anti-human CD3 Antibody Biolegend 317308
PE anti-human CD11b Antibody Biolegend 301306
Monoclonal ANTI-FLAG® M2 antibody produced in mouse Sigma Aldrich F1804
Chemicals, peptides, and recombinant proteins
Holo-transferrin Human Sigma Aldrich T0665
Hygromycin B Gibco 10687010
Erastin Selleck S7242
FIN56 Selleck S8254
FINO2 Cayman Chemical 25096
Deferoxamine mesylate Selleck S5742
Ferrostatin-1 Selleck S7243
BODIPY 581/591 C11 Invitrogen D3861
CellROX Green Reagent Invitrogen C10444
MitoTEMPO (hydrate) Cayman Chemical 16621
N-acetyl-L-Cysteine Cayman Chemical 20261
(±)-α-Tocopherol Acetate Cayman Chemical 28399
Polyethylenimine, Linear, MW 25000, Transfection Grade (PEI 25K) PolySciences 23966-100
Ambion RNase I, cloned, 100 U/μ Invitrogen AM2294
GlycoBlue Coprecipitant (15 mg/mL) Invitrogen AM9515
Cycloheximide Sigma Aldrich C7698
Ultra Low Range DNA Ladder Invitrogen 10597012
SYBR Gold Nucleic Acid Gel Stain (10,000X Concentrate in DMSO) Invitrogen S11494
RSL3 Selleck S8155
CC100 StemCell Technologies 2690
BioTracker Far-red Labile Fe2+ Dye Millipore Sigma SCT037
SM-164 1mg Cell Signaling Technology 56003S
Z-VAD-FMK Selleck S7023
Recombinant Human TNF-α 10ug Peprotech 300-01A
Mitomycin C 10mg Selleck S8146
Iron(II) sulfate heptahydrate F7002-250G Sigma Aldrich
Liproxstatin-1 Cayman Chemical 17730
Staurosporine Cayman chemical 81590
Methanol Sigma Aldrich 179337
RPMI1640 medium Life Technologies 11875-119
Opti-MEM Gibco 31985-062
Ficoll-Paque Premium sterile solution GE Healthcare 17-5442-02
0.25% Trypsin (1X) Gibco 15050-057
Blotting nonfat dry milk BioRad 1706404XTU
Cas9 protein, recombinant IDT 1081061
Penicillin-Streptomycin 10,000u/ml Life Technologies 15140-122
Recombinant Human TPO Peprotech 300-18-100UG
Formamide Sigma Aldrich F7503
TBE Buffer (Tris-borate-EDTA) (10X) Thermo Scientific B52
Annexin-V-Binding Buffer Biolegend 422201
L-Glutamine 200mM for cell culture GIBCO 25-030-081
SSC (20X), RNase-free Invitrogen AM9763
DMEM High Glucose Life Technologies 11965-118
Critical commercial assays
Glutathione Peroxidase Assay Kit Cayman Chemical 703102
Protein Synthesis Assay Kit Cayman Chemical 601100
Hemin Colorimetric Assay Kit BioVision K672
Iron Colorimetric Assay Kit BioVision K390
Kapa Library Quantification Kit - Complete Kit (Universal) Roche 7960140001
mMESSAGE mMACHINE T7 Transcription Kit Invitrogen AM1344
MEGAclear Transcription Clean-Up Kit Invitrogen AM1908
Poly(A) Tailing Kit Invitrogen AM1350
Deposited data
Single cell RNA seq This paper GSE221170
Ribosome Profiling This paper GSE221170
Experimental models: Cell lines
CD34+ HSPCs Fred Hutch
HEK293T ATCC CRL-3216
Experimental models: Organisms/strains
NBSGW JAX Laboratory 026622
Oligonucleotides
Alt-R® Cas9 Electroporation Enhancer IDT 1075916
Universal miRNA Cloning Linker New England Biolabs S1315S
qPCR primers and genotyping/editing efficiency testing primers Genewiz Table S8
Chemically synthesized sgRNA Synthego Table S9
Recombinant DNA
MGC Fully Sequenced Human SLC40A1 cDNA Horizon Discovery MHS6278-202801506
MGC Fully Sequenced Human FTH1 cDNA Horizon Discovery MHS6278-202755914
MGC Fully Sequenced Human ALAS1 cDNA Horizon Discovery MHS6278-202831218
MGC Human HSPB1 Sequence-Verified cDNA Horizon Discovery MHS6278-202756315
MGC Human RELB Sequence-Verified cDNA Horizon Discovery MHS6278-202801567
Software and algorithms
Graphpad Prism v.9.0.1 Graphpad RRID:SCR_002798
Biorender Biorender RRID:SCR_018361
Flowjo Flowjo RRID:SCR_008520
ImageJ v1.52a Wayne Rasband RRID:SCR_003070
R The R Foundation
STAR v2.7.10a
Bowtie2 v2.3.3
RiboCode v1.2.15
Cutadapt v4.1
CellRanger v7.0.0 10xGenomics
Seurat v4.0.2
Other
In-Fusion® HD Cloning Plus Takara/Clontech 638909
Q5 site directed mutagenesis kit New England Biolabs E0554S
iScript cDNA Synthesis Kit BioRad 1708891
Monarch® DNA Gel Extraction Kit New England Biolabs T1020L
iQ SYBR® Green Supermix BioRad 1708882
P3 Primary Cell 4D Nucelofector X Kit S Lonza V4XP-3032
SuperScript III Reverse Transcriptase Invitrogen 18080044
Chromium Next GEM Single Cell 3ʹ Kit v3.1, 16 rxns 10XGenomics PN-1000268
Chromium Next GEM Chip G Single Cell Kit, 48 rxns 10XGenomics PN-1000120
Dual Index Kit TT Set A, 96 rxns 10XGenomics PN-1000215
CircLigase ssDNA Ligase Lucigen CL4111K
T4 RNA Ligase 2, truncated New England Biolabs M0242L
StemSpan SFEM II StemCell Technologies 09655
Fetal Bovine Serum - Premium Select G21162 Bio-Techne S11550
SUPERase•In RNase Inhibitor (20 U/μL) Invitrogen AM2694
EasySep Human Cord Blood CD34 Positive Selection Kit II StemCell Technologies 17896
Immobilon-P PVDF Membrane Millipore Sigma IPVH00010
SPRIselect Beckman Coulter B23317
Qubit 1X dsDNA HS Assay Kit ThermoFisher Q33231
Zero Blunt TOPO PCR Cloning Kit for Sequencing, without competent cells 25rxn Invitrogen 450031