Key resources table
REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Anti-MYSM1 antibody | Abcam | ab-221725 |
RPS24 Polyclonal antibody | ProteinTech | 14831-1-AP |
RPS7 Polyclonal antibody | ProteinTech | 14491-1-AP |
Ferroptosis Antibody Sampler Kit | Cell signaling Technology | 29650 |
Brilliant Violet 421™ anti-human CD34 Antibody | BD Biosciences | 562577 |
PE Mouse Anti-Human CD66b | BD biosciences | 561650 |
PE Mouse Anti-Human CD33 | BD biosciences | 555450 |
PE Mouse Anti-Human CD19 | BD biosciences | 555413 |
RPL15 Polyclonal antibody | Proteintech | 16086-1-AP |
RPL23 Polyclonal antibody | Proteintech | 10727-1-AP |
Ferritin light chain Polyclonal antibody | Proteintech | 10727-1-AP |
anti-CD90-PECy7 | BD biosciences | 561558 |
APC-H7 Mouse Anti-Human CD45RA | BD biosciences | 560674 |
Necroptosis Antibody Sampler Kit | Cell signaling Technology | 98110T |
Apoptosis Antibody Sampler Kit | Cell signaling Technology | 9915T |
hnRNP-E1 Polyclonal antibody | proteintech | 14523-1-AP |
PCBP2 Polyclonal antibody | proteintech | 15070-1-AP |
SLC40A1/FPN1 Polyclonal antibody | proteintech | 26601-1-AP |
GCLM Polyclonal antibody | proteintech | 14241-1-AP |
GCLC Polyclonal antibody | proteintech | 12601-1-AP |
FITC Annexin V | Biolegend | 640906 |
APC anti-human CD49c (integrin α3) Antibody | Biolegend | 343808 |
ALAS1 Polyclonal antibody | proteintech | 16200-1-AP |
HSP27 Polyclonal antibody | proteintech | 18284-1-AP |
RELB Polyclonal antibody | proteintech | 25027-1-AP |
Ferroportin/SLC40A1 Antibody - BSA Free | Novus Biologicals | NBP1-21502SS |
BB700 Mouse Anti-Human CD133 | BD biosciences | 747638 |
rat anti-human anti-EPCR-PE | Biolegend | 351904 |
PE anti-human CD34 Antibody | Biolegend | 343506 |
PE anti-human CD3 Antibody | Biolegend | 317308 |
PE anti-human CD11b Antibody | Biolegend | 301306 |
Monoclonal ANTI-FLAG® M2 antibody produced in mouse | Sigma Aldrich | F1804 |
Chemicals, peptides, and recombinant proteins | ||
Holo-transferrin Human | Sigma Aldrich | T0665 |
Hygromycin B | Gibco | 10687010 |
Erastin | Selleck | S7242 |
FIN56 | Selleck | S8254 |
FINO2 | Cayman Chemical | 25096 |
Deferoxamine mesylate | Selleck | S5742 |
Ferrostatin-1 | Selleck | S7243 |
BODIPY™ 581/591 C11 | Invitrogen | D3861 |
CellROX™ Green Reagent | Invitrogen | C10444 |
MitoTEMPO (hydrate) | Cayman Chemical | 16621 |
N-acetyl-L-Cysteine | Cayman Chemical | 20261 |
(±)-α-Tocopherol Acetate | Cayman Chemical | 28399 |
Polyethylenimine, Linear, MW 25000, Transfection Grade (PEI 25K™) | PolySciences | 23966-100 |
Ambion™ RNase I, cloned, 100 U/μ | Invitrogen | AM2294 |
GlycoBlue™ Coprecipitant (15 mg/mL) | Invitrogen | AM9515 |
Cycloheximide | Sigma Aldrich | C7698 |
Ultra Low Range DNA Ladder | Invitrogen | 10597012 |
SYBR™ Gold Nucleic Acid Gel Stain (10,000X Concentrate in DMSO) | Invitrogen | S11494 |
RSL3 | Selleck | S8155 |
CC100 | StemCell Technologies | 2690 |
BioTracker Far-red Labile Fe2+ Dye | Millipore Sigma | SCT037 |
SM-164 1mg | Cell Signaling Technology | 56003S |
Z-VAD-FMK | Selleck | S7023 |
Recombinant Human TNF-α 10ug | Peprotech | 300-01A |
Mitomycin C 10mg | Selleck | S8146 |
Iron(II) sulfate heptahydrate | F7002-250G | Sigma Aldrich |
Liproxstatin-1 | Cayman Chemical | 17730 |
Staurosporine | Cayman chemical | 81590 |
Methanol | Sigma Aldrich | 179337 |
RPMI1640 medium | Life Technologies | 11875-119 |
Opti-MEM | Gibco | 31985-062 |
Ficoll-Paque Premium sterile solution | GE Healthcare | 17-5442-02 |
0.25% Trypsin (1X) | Gibco | 15050-057 |
Blotting nonfat dry milk | BioRad | 1706404XTU |
Cas9 protein, recombinant | IDT | 1081061 |
Penicillin-Streptomycin 10,000u/ml | Life Technologies | 15140-122 |
Recombinant Human TPO | Peprotech | 300-18-100UG |
Formamide | Sigma Aldrich | F7503 |
TBE Buffer (Tris-borate-EDTA) (10X) | Thermo Scientific | B52 |
Annexin-V-Binding Buffer | Biolegend | 422201 |
L-Glutamine 200mM for cell culture | GIBCO | 25-030-081 |
SSC (20X), RNase-free | Invitrogen | AM9763 |
DMEM High Glucose | Life Technologies | 11965-118 |
Critical commercial assays | ||
Glutathione Peroxidase Assay Kit | Cayman Chemical | 703102 |
Protein Synthesis Assay Kit | Cayman Chemical | 601100 |
Hemin Colorimetric Assay Kit | BioVision | K672 |
Iron Colorimetric Assay Kit | BioVision | K390 |
Kapa Library Quantification Kit - Complete Kit (Universal) | Roche | 7960140001 |
mMESSAGE mMACHINE™ T7 Transcription Kit | Invitrogen | AM1344 |
MEGAclear™ Transcription Clean-Up Kit | Invitrogen | AM1908 |
Poly(A) Tailing Kit | Invitrogen | AM1350 |
Deposited data | ||
Single cell RNA seq | This paper | GSE221170 |
Ribosome Profiling | This paper | GSE221170 |
Experimental models: Cell lines | ||
CD34+ HSPCs | Fred Hutch | |
HEK293T | ATCC | CRL-3216 |
Experimental models: Organisms/strains | ||
NBSGW | JAX Laboratory | 026622 |
Oligonucleotides | ||
Alt-R® Cas9 Electroporation Enhancer | IDT | 1075916 |
Universal miRNA Cloning Linker | New England Biolabs | S1315S |
qPCR primers and genotyping/editing efficiency testing primers | Genewiz | Table S8 |
Chemically synthesized sgRNA | Synthego | Table S9 |
Recombinant DNA | ||
MGC Fully Sequenced Human SLC40A1 cDNA | Horizon Discovery | MHS6278-202801506 |
MGC Fully Sequenced Human FTH1 cDNA | Horizon Discovery | MHS6278-202755914 |
MGC Fully Sequenced Human ALAS1 cDNA | Horizon Discovery | MHS6278-202831218 |
MGC Human HSPB1 Sequence-Verified cDNA | Horizon Discovery | MHS6278-202756315 |
MGC Human RELB Sequence-Verified cDNA | Horizon Discovery | MHS6278-202801567 |
Software and algorithms | ||
Graphpad Prism v.9.0.1 | Graphpad | RRID:SCR_002798 |
Biorender | Biorender | RRID:SCR_018361 |
Flowjo | Flowjo | RRID:SCR_008520 |
ImageJ v1.52a | Wayne Rasband | RRID:SCR_003070 |
R | The R Foundation | |
STAR v2.7.10a | ||
Bowtie2 v2.3.3 | ||
RiboCode v1.2.15 | ||
Cutadapt v4.1 | ||
CellRanger v7.0.0 | 10xGenomics | |
Seurat v4.0.2 | ||
Other | ||
In-Fusion® HD Cloning Plus | Takara/Clontech | 638909 |
Q5 site directed mutagenesis kit | New England Biolabs | E0554S |
iScript™ cDNA Synthesis Kit | BioRad | 1708891 |
Monarch® DNA Gel Extraction Kit | New England Biolabs | T1020L |
iQ™ SYBR® Green Supermix | BioRad | 1708882 |
P3 Primary Cell 4D Nucelofector X Kit S | Lonza | V4XP-3032 |
SuperScript™ III Reverse Transcriptase | Invitrogen | 18080044 |
Chromium Next GEM Single Cell 3ʹ Kit v3.1, 16 rxns | 10XGenomics | PN-1000268 |
Chromium Next GEM Chip G Single Cell Kit, 48 rxns | 10XGenomics | PN-1000120 |
Dual Index Kit TT Set A, 96 rxns | 10XGenomics | PN-1000215 |
CircLigase™ ssDNA Ligase | Lucigen | CL4111K |
T4 RNA Ligase 2, truncated | New England Biolabs | M0242L |
StemSpan™ SFEM II | StemCell Technologies | 09655 |
Fetal Bovine Serum - Premium Select G21162 | Bio-Techne | S11550 |
SUPERase•In™ RNase Inhibitor (20 U/μL) | Invitrogen | AM2694 |
EasySep Human Cord Blood CD34 Positive Selection Kit II | StemCell Technologies | 17896 |
Immobilon-P PVDF Membrane | Millipore Sigma | IPVH00010 |
SPRIselect | Beckman Coulter | B23317 |
Qubit™ 1X dsDNA HS Assay Kit | ThermoFisher | Q33231 |
Zero Blunt™ TOPO™ PCR Cloning Kit for Sequencing, without competent cells 25rxn | Invitrogen | 450031 |