Table 2:

Parameters of the ghost-introgression demographic model, reproduced from Table 1 from Durvasula et al. [40]. Note that our simulations used the command from Durvasula et al.’s GitHub repository (https://github.com/sriramlab/ArchIE/, which also contains a brief bottleneck experienced by the ghost population.)

Parameter	Value
Reference population size, N1	500
Target population size, N2	500
Archaic population size, Na	500
Burn time / archaic split time	20N
Split time coefficient, α	0.25
Split time ago, tS	αN
Migration time coefficient, β	0.2
Migration time ago	βN
Migration probability	0.02
Mutation rate	2.5 × 10−7
Recombination rate	2.0 × 10−7