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Efficacy of allele-specific expression (ASE) analysis across differing modes of variant calling and RNAseq alignment strategies.
| ASE Mode | chr8 # | chrX # |
|---|---|---|
|
| ||
| Default VCF, Default RNAseq | 885 | 819 |
| Default VCF, SCC-aware RNAseq | 885 | 823 |
| SCC-aware VCF, Default RNAseq | 885 | 834 |
| SCC-aware VCF, SCC-aware RNAseq | 885 | 835 |
